G372086 (LOC108258915)


Basic Information

Item Value
gene id G372086
gene name LOC108258915
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7718263 ~ 7724795 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440780
GTGGTTCCATGGGCTTGTGCATGCTTGAGGACTCGGATGAGGAGTTCCCGTTAGAATAGGGCTCAGATGAACGAGGAGGAACTGGCGGCTGCTTGGGTGGAGCTGTCTGAGGCGAGCCCTGATGGTTCTTACGGTATCTTTCATCAGCCTGGCACAAAGGACACAAATTGCGGAGATTAACTGGTGGGCATGAGGGACACCTCAAAGAGAACTGACAATTGTTCCAAGCCAGGAAACTGCATGCTGGTGTACAACTCAGCAAGCTCAAGTAAGAGAGggacaaaacagacaaaactgtGTTAGGACATTGCTGCTCTGGCTTATATTCAAGCCAACATGAATTTCatgctcataaaaaaaaaaaaaccttcactaCACTTTTCTAAATATTAAGACAACCAAAGACAAGAGTTTTTCCTAAGGACTAGGATCATAGCCAAACCATGacatgcaaaacaaacacaaggaaaaagaagaaggaagcaTTTGAAAATCTGGTATCACCCTGAGAACAATAACTAATAATTACCAATGACCAGTGTGggtcaagtttaaaaaaaatttaaacactgagctaTATTATACGTCTTTCAATtcaaattatgtaaaatataaaatataaaaatatgggTTTAGTTTACACAAGAAAGCAAGACAAGATTTAAAAGGAGACAGGATGTAGTTTTTCATTCTCGTTCATGACTATGGTGGTGAGCAATATGGTTTTCTTtctgaaaagctgaaaagcAAGGCTTAatccaatttttaaaaaggattGTGTAACTGATACACAGAGTCTTCCACTGACATGGTGAACAGACTGGCTCCGGGAGCCGGGATGTAATCTTAACATtctacaaattttttttttgtgtgcaaaaATAGAGCTTGGTGTGCGTTGATGAGCGGAACACCGTTTTTTACAAAGtggtcaataaaaaaaatcaataaaataaagatcaataaaaggtttttattaaatatatagcaCTTAAAACATTAAGTCTATATTCACTGATGAATATAGGTCTCATCttccaaaatgcaaaatatacatattttgaTACTCTTTGATAAAGCGTAATTAACGTCGGATTTGAGGATTATGAGGATTTGACTTTTGAAAGTAAAATATGGAAGGCAAAACTATCCAGTCTTTTATGTCTCCAGTGTTTTGGATTGTAAACTGTCACCTTATCAGTGGAAAAAGGGTGTGGGAGTACCATGGTAATATTGTACTTGATCACTATCAAACGTAATTTGCACTCTAACAATGAAGCAAAATGTGATGTGGtggataatgataatgatgctGAATATGTGCTTTAAAAGATCAGTATCCAAAGAAAACCAAATTTCTGCTGCTCCCACCAGCACACTGTTACCTGACTGCCAATAAGTTAAATGTTCTTCACATGCAAAACTGAGCCGAGGTTAGCTCGAGAAGCCAGAGTAGCAGCAGGCAACAGTGGGTGGACTAAGGGGATGGCTTTTCACCTCTCCGACTGGCTGGGCTTCAGACACCGGGCCACTGGTTGGAGTTGACTGGACGGGGGGGTCGTCagtcctgtctgtctcacccacTGGCTGTGTGACTAAAGGGCTGGAGTCCACTGACACACTTTCAGTCTGTTCCCTGCACTCATCAGTAAGGGCTTCTTTCCCATCTACATGTTTATTCTGCTCTGCATCAGGATTTACACTTTGGTCACTGTCAGTCTGATGTGGAAGGTCAGCATTTGGCGTGCCCTCATCTGCGTTAGAGTTAACTGGGGGATCAGGGGCGTCTAAGGGGCGTGCTTGGGGTAGTTTTGCCCAGTCGGGCTGGGCTGTGAGGGAGGAAGTGCGCTGTTTGGGCCCGTGCTGCAGGGAGAGCAGGTAGGCCTGCTCCTGCTGGAGCTGCCGCTGCAGCCGCTCCGCCTTCCGCTGCTCCTCCAGCTCCCGCCATTTGAACTCCTGAGCACAGAGCGTAGCTCCATGAAAAAGCTCCACAATTATTGAGTAAATTTCCATGCGTTTTAACACATTACATGTGTTTGTACATACTGCCACTAAAATATGTTGTTTAGTAATTATACTCAGTATGGTATGTAATATTAAATTAGCATTCTGTAGCTGATGCAAATATTATACTCATGCTCTAgagccatggttctcaaagagGGGTCTGTAAAGCTAATACAGACTAATTTTGTTAGATTTAGCAAGTTTATTATGTCTATAAAAAGGTTGGATGGTTAAGGAAAAACACAGTGGCTTTAATAGACAGCCAAAATAttaattcacacatttaaataatataaatataaaatgatttatttataaaataaatctgtactgatggGACTGtgaatttattgtattttattttatttattattattgctatttttttttttttttaacagttaaagaGCTCCCTGACTGTAAatagtttgagaacccctgctctaGAGCATGTGGTCCTAGATGCTGATAATCTAAATGACCgtgattaaaaatgtctttagtTCTGACGATTAAAATTACACTGGTCTCTAAGATGAGATACAATGGTGAGAAAATTTATTTCAGGCAGCAACCTTACACCACAACACTTTTCCAAACACCACGTCGCCTTACATGCTTCTAACCAGCAGCtctaaaataaacactgtattactgtatttgtttattcactGATGTGTATGTGATGGATGGAAATGGGAAGAAATGAGAAAAggtcaacaaaaaaaaccctgagagaGAAGCATTTAACTTTGTTTGTGGCAGTCCCATATTAACTCATTTCCACTTTCTCCCCCTGAGACACTGTGCAGGCTGTTTACAACATAAACAGCTCCCCGCAAAGACAAGAACAATGACTTTGGCCTAACCACGGGAGAGAGAGGAATAGTAGGAAATCCCCTCTCTTCCTGCTGGGCATTTCCTGCGGTCGTGTCATGAGACTATGCTTATATAAATATACGGCTGGACAGATTGAACCTTCTCCCTCTGGGAGCGTGCTGTATACTGATGATACGCGACACCATTAGAAACGTTAGTGAATCTTTGATCTTGCGATGATCTCAAATCATCCCATTTTAGCTTAATAGAACAGGCCAGAAATAACACTGAGCTCCAgacaaaattaaacacaaacagtagACTCTGTTGTAAGGCTTCAGACTTTACTAAGAGGACATGAGAAGGAAAAGGCAGAATTCCTACCAGTAACATGGCCTGCTCGTGAAGCAGCTGCTGCTGAAGGATCTCTAGATGCCTCTGCTCCTCTTCCAGCTGACGGCGGATATATTCCTGTTCACGATCGTTTCgtcttttctcctcctctgccCTCCTGCGCTCATCCTCCTCTTTGCGCCGGCGCTCCATCTCCTCTAttctccttttctcctcctgctcccGCCGCCTCTGCTCACGCTCCTGCTGCCTTCTCAACTCTCGCTCACGCCGTTGTTGCTCCTCCAGACGTCTCCTTTGCTCCTTCTGCTGCTCTATGCGTTTCTGGCGCTCAGCCAGCAGTTGCCGCTTGTACTCCTCCTGCTCGCGGAGCTGCTGTTCTTGAAGAAGCTGCTGTCTCTTCAGGGCCTCCGAGCGCTCCTTGTTTTCCTGCTGCAGCCGGATGAAGTCTCGCCGCAGCGTCGACTCGCCAGGTACGTTCACTATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440780 True 3669 TUCP 0.42 3 7718263 7724795

Neighbor

gene id symbol gene type direction distance location
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 415699 7253751 ~ 7302564 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding downstream 491614 7218365 ~ 7226649 (-)
LOC113537349 LOC108258693 coding downstream 516938 7184802 ~ 7201325 (-)
sugt1 sugt1,LOC104941757 coding downstream 536781 7156580 ~ 7181482 (-)
pcdh8 LOC108258318 coding downstream 621557 7092802 ~ 7096706 (-)
lig4 lig4,LOC108412030,LOC107654268 coding upstream 281577 8006372 ~ 8010233 (-)
irs2a LOC108258957,LOC108434672 coding upstream 317690 8042485 ~ 8054545 (-)
LOC113537312 LOC108259043 coding upstream 337426 8062221 ~ 8066451 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding upstream 362985 8087780 ~ 8090097 (-)
ankrd10a ankrd10 coding upstream 366571 8091366 ~ 8105352 (-)
G372095 NA non-coding downstream 13875 7682685 ~ 7704388 (-)
G372108 NA non-coding downstream 77877 7640173 ~ 7640386 (-)
G372038 NA non-coding downstream 124315 7593471 ~ 7593948 (-)
G372037 NA non-coding downstream 128233 7589814 ~ 7590030 (-)
G372034 NA non-coding downstream 133760 7584264 ~ 7584503 (-)
G372085 NA non-coding upstream 5915 7730710 ~ 7731108 (-)
G372132 NA non-coding upstream 55267 7780062 ~ 7781205 (-)
G372168 NA non-coding upstream 184329 7909124 ~ 7909552 (-)
G372288 NA non-coding upstream 251982 7976777 ~ 7976991 (-)
G372300 NA non-coding upstream 264155 7988950 ~ 7989198 (-)
LOC113537388 arhgap6 other downstream 239754 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 649732 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 807717 6870566 ~ 6910546 (-)
LOC113537742 LOC108258591 other downstream 1355060 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 1684870 6015726 ~ 6033393 (-)
fam155a LOC108258331 other upstream 187415 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 344607 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 536640 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 596073 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 704767 8429562 ~ 8432438 (-)

Expression


Co-expression Network