G372132


Basic Information

Item Value
gene id G372132
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7780062 ~ 7781205 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440830
CTGCATACTGCATAACTGCTTTTACATCTGCATACTAATTCGAGGAAGACTGCAGAATCACATTTAGAGACGTACAAATGGCAACAAATGGAGTAATGGAATATTTAATGCAATAAAAACTAGGACGTGGTTGAGCACTCAAGAGATATTAAAAAGTGGacattaaattaataaagcattaacaaatattaaaccTTGAATAGCAGCAAAATGGCTTTGTCCATTTCTTTTTATCTGACAGTAAAATAAGAAAGCAATggtctgtagaaaaaaaaaaattgtccatgCATTAGTGAAATGAACACAACTCTTAGAGCATCAAGGTAATTATAAAGTTCAGaggaaattcagaaaaaaaattctaaaagaAATGTATTCTCCATAGTGTCGAATAGAGGTTTATgtgattttatgtattaaacCATTTAAAGAGACTGGCTTTAGGGCAGTTCTCCGTGTATAGCTTTTATCTAGTGATTAACTTTCAAAATTTCAACTTTTTAATCTTGATTAATCATGAAATCAGGTTAAATGAACACATATAAATGGTACATTTTAGAAAGTAAATTCTTAGATTGTAAGTTTCTGACCTACAGTGGCtagcataagtattcacccccttgaccaattccacattttgtagtgttacaacctggaactggaCTCAGCTGTGAATATGTGCCATgattctacacaaaatagcccataaaaTTGAAGTGGTGGGAAGTCAATATAGTTAGCAAAATTGTTGTGCGTGCATAAatattgctgtgaaacccctaaattagttctggtgcaatcAGTTACCATCAGAAGACACATATTATTTGAATGGAGCTGACCTGTGTAAAATTAAAGTGtcctcaatataaatacacctgttcctggaacaCCCCAGAGTTtattagagaacatacctaaacaaacagcgtCATGAAGATTATCAAAACAAGTCAAAAAAAGTTCAAGGTTAGGCCATAAAACATATCCCAAACTTCGAACATCCCATGCAGTACCATTTAGTCTATtatgtaaaaatttaaatatatggCACAACCATGACTCCTAGAGGAGGCCATctaccaaaagtcagtgaccggGTAAAGAGGGCATTACTCAGAGAAGAAGCAACagagaggccaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440830 True 1144 lncRNA 0.34 1 7780062 7781205

Neighbor

gene id symbol gene type direction distance location
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 477498 7253751 ~ 7302564 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding downstream 553413 7218365 ~ 7226649 (-)
LOC113537349 LOC108258693 coding downstream 578737 7184802 ~ 7201325 (-)
sugt1 sugt1,LOC104941757 coding downstream 598580 7156580 ~ 7181482 (-)
pcdh8 LOC108258318 coding downstream 683356 7092802 ~ 7096706 (-)
lig4 lig4,LOC108412030,LOC107654268 coding upstream 225167 8006372 ~ 8010233 (-)
irs2a LOC108258957,LOC108434672 coding upstream 261280 8042485 ~ 8054545 (-)
LOC113537312 LOC108259043 coding upstream 281016 8062221 ~ 8066451 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding upstream 306575 8087780 ~ 8090097 (-)
ankrd10a ankrd10 coding upstream 310161 8091366 ~ 8105352 (-)
G372085 NA non-coding downstream 48954 7730710 ~ 7731108 (-)
G372095 NA non-coding downstream 75674 7682685 ~ 7704388 (-)
G372108 NA non-coding downstream 139676 7640173 ~ 7640386 (-)
G372038 NA non-coding downstream 186114 7593471 ~ 7593948 (-)
G372037 NA non-coding downstream 190032 7589814 ~ 7590030 (-)
G372168 NA non-coding upstream 127919 7909124 ~ 7909552 (-)
G372288 NA non-coding upstream 195572 7976777 ~ 7976991 (-)
G372300 NA non-coding upstream 207745 7988950 ~ 7989198 (-)
G372307 NA non-coding upstream 234900 8016105 ~ 8016388 (-)
G372471 NA non-coding upstream 421563 8202768 ~ 8204224 (-)
G372086 LOC108258915 other downstream 55267 7718263 ~ 7724795 (-)
LOC113537388 arhgap6 other downstream 301553 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 711531 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 869516 6870566 ~ 6910546 (-)
LOC113537742 LOC108258591 other downstream 1416859 6358639 ~ 6363203 (-)
fam155a LOC108258331 other upstream 131005 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 288197 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 480230 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 539663 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 648357 8429562 ~ 8432438 (-)

Expression


Co-expression Network