cars2 (cars2)


Basic Information

Item Value
gene id cars2
gene name cars2
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8069402 ~ 8084539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU441040
GGACGAGCAGTGTTGCGTCCAGATGATCAACAGCCTAAAACGcattttttgaaatttgtcCGATTTCTAGTCTTCGGGATGCAAAAATCGCTACCGAAACCGGAAACGCGTCACTTAGGACTGTACTGTGCTTAGGTTTATTTTGGGACCGAAAATGGTTTTAGTTTCCAGTTTGACTGCAGAGAGCCACCGGAAAGAGGCTAGTCTGCAGAAAGCGCGTGGCACTGCAGCGgacacagggtcatgggggagcctggagcttatcccagggaacttggggcgcAATCAATCGGAAATTtccaatttggaaatgccaaatTCCGCACACACGCAGAGCAGAGgcgggaattgaacccccagccctggaggtgAGGAGCAAACCACTAAGCCACGGTTCCCCCAATACTACagtttaccttcactggaactaagaggaccaaacctgttccagcatgacaatgcccctgtgcacaaagcaagctttATAAagtcatggtttgccaagatttgAAGGTTGTgcaagaactcaagtgtcctgcacagagccctgacctcaacccaactgaacacctttgggatgaactggaacactgactgcaccccagacctcctcacccaacatcagtgcctgatctcactaatgctcttgtgactgaatgggtGAAGCATGGGctgaagagtgaaggttattatagcaacaaaagggggaataaatctggtaTGGGATATTCagtaagcacatatgggtgtgatggacaggtgtccacaaacatttggcgatgtactgtatatagatcTAATATAATACAGATTACTAATGTTGGGTTGGCTGGGATAAGAAAACAATTaatgaaattgattattttccaataataacatgtgttttaaaaacacaagtgttttatttcacttatctCACAGCAGATTGCccatgattacaattttaatctattaatgtagaacacatcatactttaatcatttatagttatatttaatgttaggGAATGTCAGCGACTTcattacttacattacagcagctataaacagtcatttctccACTAtcctgttttttcctctctcttgaacttaataagccca
>XM_026931658.2
tttgtcCGATTTCTAGTCTTCGGGATGCAAAAATCGCTACCGAAACCGGAAACGCGTCACTTAGGACTGTACTGTGCTTAGGTTTATTTTGGGACCGAAAATGGTTTTAGTTTCCAGTTTGACTGCAGAGAGCCACCGGAAAGAGGCTAGTCTGCAGAAAGCGCGTGGCACTGCAGCGGGCGTGAGAATGAGGCCTTGTGTGAGTCTGATCAGAAGTGCAGTCTGGAACTGCAGACTCAAGGTTAGCCATGGAGCATTTCAGACAAATCCAACAGTCCCAAAGCGGACGCTGTGCATGGAAATCAGGAACAAATGGACCAGACCAGCTGGCTATGATACTGGCATAAAGACTTTCAACAGTCTCACCAAACAGAAGGAGCCTCTGGTTTTGGCTCAAGAGGGAAGAGCAACCTGGTACAGTTGTGGACCCACAGTTTATGATCATGCACATCTTGGTCATGCATGCTCCTATGTCAGATTTGACATCCTGCAGAGAATTTTAACCAGGATATTTGGAATAAACGTAACTCATGTCATGGTCATCACTGACATTGATGATAAGATCATACAGAGAAGCCTTGAGGAGAACATCTCACCGCTTGTGCTTGCCAGAATGTATGAAGAGGAGTTTAAAAGAGACATGCTTGCCCTGAAGGTCCTCCCACCAGCCGTGTATATGAGAGTCACGGAGAACATACCTCAGATTGTAGCTTTCATTGAAGGCATCATCAGTAATGGCCATGCTTACACCACAAGCGAAGGGGATGTCTACTTTGATACTCAATCCATTGGCAGTCGTTATGGCAAGCTTGTGAACGTGGGAAATGCTGCTGTGGAATCGGGAAGCAAGGATAAAAGGGACCCCCGAGACTTTGCCCTGTGGAAAGCCTGGAAGCCGCTTGAACCTTTCTGGGAGTCTCCATGGGGAAGAGGAAGACCTGGCTGGCACATCGAGTGCTCCACTATTGCCAGCTCTGTGTTTGGGAGCCAGTTGGATATCCACTCAGGAGGCATCGACCTTGCCTTTCCTCACCACGAGAATGAAATTGCTCAGTGTGAGGCTTACCACAAGTGTGACCAGTGGGGGAACTACTTCCTGCACTCAGGGCACCTTCATTTGAAAGGCAGTGCAGAAAAGATGTCCAAGTCCTTGAAGAATTATATTACAATAAAGGAATTCTTAGACTCTTATACTGCCAATGAGTTTAGGCTGTTTTGCCTGTTGACCAAGTACAGATCAGCGATTGATTACAGTGATGCCAGTATGAATGAAGCTCGCTCTACACTGTCCTCCATCAATGGCTTCATCTATAATGCCCAGGCCTACATGCAGGGTCACCTACAGTGCAAGGACATACATGAGAGCTTTTTATGGGAGAGGTTATCAGTCACACAGGCCACCATGCGAACAGCACTTGCAGATGACTTTGACACGCCAAAGGCAATAGACGCCATCATGAACCTCATTCACCACGGAAACTGTCAGCTTCAGCCTGTTACCAAGGTTGATGGGAGCTCTAGGTGTCCAGCAGTGTTTGGAGCAATGCTGTCTTACATCAGGGATATCATGGATGTCCTTGGAGTTGATCTGCTGGATAAAAAGGAGTCATCCAGTGCTGAATCATCCGGTATTTTACACAATGTAGTGGAGCAGCTGGTGCGCTTCCGTAGTGAGGTTCGAAACTTTGCTCTCTCTGTGGAGGATGAAGCGACTCAGGACCTTCACACCAGCAAAGTGCCTCAGAGCAAGAGACCACAGCCAGACAGATTGCCCTTACTGAAGGCCTGTGATGCCCTTCGCAATGATCTAATGCCCTTGGGAGTTCAAATTAAGGACAGAGGTACCAACTCCACGTGGGAAATCAAACAACAAcagaaggagaagagaggaaaagaaagctaGACTCCACCTCAGTCCAGTCTAGAGAACTGGATCAGCTTTTTTGTTAACTGGTCTGAatgttacttttatttttaaaactttttttgagAAAACACTTAAGAAGTTGATTGTGGTTTGCTTCCTTTGAGCCAGCCACTGACTCTTGAATTATTATCTGTGATGATCATGTACTTTACCAACAGTCAATGCAACACAGTTATTTGAATCACAAATTATTTGGTGTCTCATCTGTAGTATAAAAGCTGTTATGCACTATATTCAGCAGCCATCTTGAGAGTAAATTGCTTTTGAGATTTGC

Function

symbol description
cars2 Predicted to enable ATP binding activity and cysteine-tRNA ligase activity. Acts upstream of or within gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 27. Orthologous to human CARS2 (cysteinyl-tRNA synthetase 2, mitochondrial).

NR:

description
PREDICTED: probable cysteine--tRNA ligase, mitochondrial

GO: NA

KEGG:

id description
K01883 CARS, cysS; cysteinyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
TU441040 False 1100 lncRNA 0.43 2 8082963 8084539
XM_026931658.2 True 2201 mRNA 0.46 17 8069402 8084485

Neighbor

gene id symbol gene type direction distance location
LOC113537312 LOC108259043 coding downstream 2951 8062221 ~ 8066451 (-)
irs2a LOC108258957,LOC108434672 coding downstream 14857 8042485 ~ 8054545 (-)
lig4 lig4,LOC108412030,LOC107654268 coding downstream 59169 8006372 ~ 8010233 (-)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 766838 7253751 ~ 7302564 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding downstream 842753 7218365 ~ 7226649 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding upstream 3241 8087780 ~ 8090097 (-)
ankrd10a ankrd10 coding upstream 6827 8091366 ~ 8105352 (-)
cryaa cryaa,LOC106939151 coding upstream 43022 8127561 ~ 8131183 (-)
cbsa cbs,LOC107742639,LOC107654262,LOC107667662 coding upstream 48448 8132987 ~ 8148533 (-)
u2af1 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC101158751 coding upstream 65601 8150140 ~ 8157560 (-)
G372307 NA non-coding downstream 53014 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 80204 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 92411 7976777 ~ 7976991 (-)
G372168 NA non-coding downstream 159850 7909124 ~ 7909552 (-)
G372132 NA non-coding downstream 288197 7780062 ~ 7781205 (-)
G372471 NA non-coding upstream 118229 8202768 ~ 8204224 (-)
G372522 NA non-coding upstream 344065 8428604 ~ 8444065 (-)
G372742 NA non-coding upstream 690493 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 879046 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1675202 9759741 ~ 9759949 (-)
fam155a LOC108258331 other downstream 76306 7912210 ~ 7993096 (-)
G372086 LOC108258915 other downstream 344607 7718263 ~ 7724795 (-)
LOC113537388 arhgap6 other downstream 590893 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 1000871 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 1158856 6870566 ~ 6910546 (-)
LOC113537489 NA other upstream 176896 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 236329 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 345023 8429562 ~ 8432438 (-)
tsga10 LOC108258346 other upstream 506868 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1794304 9878843 ~ 9918779 (-)

Expression


Co-expression Network