G373317


Basic Information

Item Value
gene id G373317
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9825461 ~ 9825693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442150
GTTTTGTACTGGAGCCACAATTAAGGGAGTTTAGCAAAACTATCACACGCTGATCAACATGAAAACACATCTTTCGTGTTTTCATAAATCagcaaaacaaatccatattaAGAGATAAATATACAAATCATGAATCTGAACTATAATCATCCAAATCCCCTATAATGTACTGTACCCTGCTAATACCACTAAGTGCTGTGTAAGAAAGTGATTCCAGTGATTCAAAATGGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442150 True 233 lncRNA 0.35 1 9825461 9825693

Neighbor

gene id symbol gene type direction distance location
sh3pxd2aa sh3pxd2a coding downstream 1753 9807172 ~ 9823708 (-)
cfap58 cfap58 coding downstream 119635 9597014 ~ 9705826 (-)
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding downstream 278204 9306733 ~ 9547257 (-)
caly caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014 coding downstream 977297 8835487 ~ 8848164 (-)
msx1b LOC108258334 coding downstream 1027213 8796367 ~ 8798248 (-)
stn1 obfc1 coding upstream 94129 9919822 ~ 9927977 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding upstream 105756 9931449 ~ 9937173 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding upstream 113603 9939296 ~ 9961370 (-)
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding upstream 142758 9968451 ~ 9970159 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding upstream 168008 9993701 ~ 10043255 (-)
G373303 neurl1,neurl1aa,LOC107676877,LOC107746293,LOC107746052 non-coding downstream 25551 9793369 ~ 9799910 (-)
G373316 NA non-coding downstream 32840 9792282 ~ 9792621 (-)
G373310 neurl1 non-coding downstream 38600 9785983 ~ 9786861 (-)
G373296 neurl1,LOC103384027 non-coding downstream 57979 9767039 ~ 9767482 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding downstream 60935 9763619 ~ 9764526 (-)
G373327 NA non-coding upstream 5914 9831607 ~ 9832325 (-)
G373398 NA non-coding upstream 136729 9962422 ~ 9964543 (-)
G373629 NA non-coding upstream 196844 10022537 ~ 10024885 (-)
G373649 NA non-coding upstream 258746 10084439 ~ 10084737 (-)
G373656 setd4 non-coding upstream 301132 10126825 ~ 10127889 (-)
tsga10 LOC108258346 other downstream 1214620 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1393023 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1496435 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1558189 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 1740922 8069402 ~ 8084539 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 53150 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 596459 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 1045531 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 2253198 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2799358 12625051 ~ 12630403 (-)

Expression


Co-expression Network