LOC117596103 (LOC102201964,LOC102304430)


Basic Information

Item Value
gene id LOC117596103
gene name LOC102201964,LOC102304430
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9878843 ~ 9918779 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442201
GCGCTCACATTTAAAGGAGAAGCCGTGGGCTTCTGGTCGCCAGCGCGCTCACGTTCAACCACATTTATAGCCAGGCTATTGTAGTTATCACAAAGGACCGGACACAGTATTCAAGTACTTCATTATTTCCATGTGTATATAGCCTATATTTCTCCTTGTCGCGCGGACGTTAACAGTGTTTCGGTGCGGACCGAGCGGAGACGTGTCAGTTCGGATTCTCGTCGAGCTGCACTCGAATAAATGGATTCAGAGATTTCTTTTTGCAGCACGAGGCGGTAATAAATAAGTTGGAGTGCTCGGTATTTCTGCTGTAACGTCACTGCGCAGAAGAAAGTATAGAAAGCGGACGGCTCGCGAGGAAGCACGAGCGCTTCTTTTCATGAGGAAAAGACCAGCGGCTTTATTCCAGCAAACCTCTTCGTGACTGTCCCGCTCTGTGTCCCTCACTACCGCCCGGTTTAGCCCATTACATCCCGGGATTGCTTCctatctgcctgtctttctttttttttatccttttctgTGTACACCGGTTCAAAAATGCAGCTCCGGACCGTCTTGGATGTGAAAGTGGTGGACGTGGAGAAAAGGCGGCATCCGTCCAAACACTACGTGTATCTCATCAATGTCACTTACTCTGATACCACGTCCCACATTATCTACCGGAGATACAGCAAATTCTTCGACCTTCAGatgcaGCTTCTCGACAAGTTCCCAATCGAGGGAGGGCAGAAGGACCCCAAAAAGCGATCATCCCTTTTCTTCCAGGTGAGAAAAGGCACTTCCTTTGCtctttttctgttctctgtCATTCAATCACTCCATCccccacactcacacatgcagtgACAAATGCAGGCTGCCAGCAATACTGTCTGTGGTACGCCATTTTGAATGGTTGGCTAGGACACCCTCTTTT
>XM_034299863.1
GCTGAGCACAAGCGCGAGCCTTAAAGCCAACGGGATCGCGCGCTCACATTTAAAGGAGAAGCCGTGGGCTTCTGGTCGCCAGCGCGCTCACGTTCAACCACATTTATAGCCAGGCTATTGTAGTTATCACAAAGGACCGGACACAGTATTCAAGTACTTCATTATTTCCATGTGTATATAGCCTATATTTCTCCTTGTCGCGCGGACGTTAACAGTGTTTCGGTGCGGACCGAGCGGAGACGTGTCAGTTCGGATTCTCGTCGAGCTGCACTCGAATAAATGGATTCAGAGATTTCTTTTTGCAGCACGAGGCGGTAATAAATAAGTTGGAGTGCTCGGTATTTCTGCTGTAACGTCACTGCGCAGAAGAAAGTATAGAAAGCGGACGGCTCGCGAGGAAGCACGAGCGCTTCTTTTCATGAGGAAAAGACCAGCGGCTTTATTCCAGCAAACCTCTTCGTGACTGTCCCGCTCTGTGTCCCTCACTACCGCCCGGTTTAGCCCATTACATCCCGGGATTGCTTCctatctgcctgtctttctttttttttatccttttctgTGTACACCGGTTCAAAAATGCAGCTCCGGACCGTCTTGGATGTGAAAGTGGTGGACGTGGAGAAAAGGCGGCATCCGTCCAAACACTACGTGTATCTCATCAATGTCACTTACTCTGATACCACGTCCCACATTATCTACCGGAGATACAGCAAATTCTTCGACCTTCAGatgcaGCTTCTCGACAAGTTCCCAATCGAGGGAGGGCAGAAGGACCCCAAAAAGCGATCATCCCTTTTCTTCCAGGTGAGAAAAGGCACTTCCTTTGCtctttttctgttctctgtCATTCAATCACTCCATCccccacactcacacatgcagtgA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442201 True 919 TUCP 0.49 3 9878843 9918740
XM_034299863.1 False 888 mRNA 0.49 3 9878913 9918779

Neighbor

gene id symbol gene type direction distance location
sh3pxd2aa sh3pxd2a coding downstream 55135 9807172 ~ 9823708 (-)
cfap58 cfap58 coding downstream 173017 9597014 ~ 9705826 (-)
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding downstream 331586 9306733 ~ 9547257 (-)
caly caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014 coding downstream 1030679 8835487 ~ 8848164 (-)
msx1b LOC108258334 coding downstream 1080595 8796367 ~ 8798248 (-)
stn1 obfc1 coding upstream 1043 9919822 ~ 9927977 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding upstream 12670 9931449 ~ 9937173 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding upstream 20517 9939296 ~ 9961370 (-)
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding upstream 49672 9968451 ~ 9970159 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding upstream 74922 9993701 ~ 10043255 (-)
G373327 NA non-coding downstream 46518 9831607 ~ 9832325 (-)
G373317 NA non-coding downstream 53150 9825461 ~ 9825693 (-)
G373303 neurl1,neurl1aa,LOC107676877,LOC107746293,LOC107746052 non-coding downstream 78933 9793369 ~ 9799910 (-)
G373316 NA non-coding downstream 86222 9792282 ~ 9792621 (-)
G373310 neurl1 non-coding downstream 91982 9785983 ~ 9786861 (-)
G373398 NA non-coding upstream 43643 9962422 ~ 9964543 (-)
G373629 NA non-coding upstream 103758 10022537 ~ 10024885 (-)
G373649 NA non-coding upstream 165660 10084439 ~ 10084737 (-)
G373656 setd4 non-coding upstream 208046 10126825 ~ 10127889 (-)
G373657 setd4 non-coding upstream 210030 10128809 ~ 10129630 (-)
tsga10 LOC108258346 other downstream 1268002 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1446405 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1549817 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1611571 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 1794304 8069402 ~ 8084539 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 503373 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 952445 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 2160112 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2706272 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 3388934 13307713 ~ 13320530 (-)

Expression


Co-expression Network