G373629


Basic Information

Item Value
gene id G373629
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10022537 ~ 10024885 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442515
GTAAAATCAGATCATAAGGTATCATATTGCATATCCTTAAAATCTGTGTGAAGATTGGGATATGTTTCAGGATGTTTAGTTTTGTGGAAGGTAAGACGTACATTAATTAGCATAACAGACTCTAACATCCAGTTAGCTGCTTGTTGCTGTGCAGTTTAATTTGACAATATGACATCACCGTGAAGACACTCCCATCTTACTATTGTTTCTGTTGTTAGATTTTTATGACCATGTAGTTCAGTATTGTAGAAGTACTAATGAtgctctcagaaaaaaggttattaacacattttattctTGCGTTTCATGTGATGTCACTGTCATTTTGTGCTACAAATAGGGCCATGACTGCATCGATGTTACTGAGTCTGTGGTTATTAAGaagaatttacatttatactgaTAATTGAGTGAAACAATAGACTACAGGCAATACATCttaaataaacagcagtgcAATGGATCTGAAGTAAGGTAGTTTGGTAAGGTAATTTAGCCAAGTTTCACATATAGTTATAATTGTATTTTGCAGTGAAGCCAGAAATTCTGTCCCAAATCTGGCAAACCCTACATAAGAATCATGTGACTGAAACACTAGGATAATCTTTGCTGCTTTGTGCCTGCACCTTTGGGCATTTTAACAGGTAAACCTACAACATAAGACAAACTAGATACGGCATCACCAGTATGCAGTGTCCATGCTGGACTGCTAAGATGCTaagatgttatttattttcatgttaaagTTATACTGGAAATTTTAAGTGTATTCTATGGCTAAGTtgttaaattgaaaatatttttatttgtgtgtgtatatatataaatgtataacagaagaaaaagattAAATCCTCCTattgttctgtctgtctgcaaaaTAAGATATCTGTAGTAATTATAATTGATTCTCCTGGGATAAGTGATGTCTGTATGTGATGGGAGTGGCATATAGGCATGGTTGTCACTAAAAGTTTCACAAGTACTATTTGCGCATCATATCTTTAATACAAACCGGTAGCTTTGACCTTTGTTATAAGCACTTGTAGGGATTGTGGTTGCACAAATTGTGCTtgattagtaggtcacatgatatGTATATAAGCTATGCATGTGCTAGGAACTCAGTAACTTACCTACCTATAAGTGTTGTTTGTCTGACATGTCCTATTAAGGcaaagtatatattttattgttttgtgttttaaactCACCCAatactttatttagttttgatTTCAGTGGGAAATCatagaaagaaaagagcaaatgCTTCatggagtgtctttatactgaagaaaaagtgcagCACCTCTTTTTTCCACAGGATATAATAAACTTGgaatggaaaaagaccaggcacagtttttccagtcttcacctgtgCAGTTTCGGTGAGACTGTTCCCACTCTAGCCTcggattcctgtttttggctgagaggagtggaacTTAAAACGGTCTTCTGCTGTAGCCCCAAGGAGTTCAACCTGTTCTTcaatctgagatgcttttctgctcaccatggttgtaaagtgTGGTTATCAGCTCAAACCAcgctggccattctcctctgatctctcctcaacaaggcgtttccacccacagaactgccactgattggatgttttttgtttttcacaccattctgtgtaaactctagagactgttgatgagagaagcagttactgaaatactcaaactagctcTTCTGGCACTATCAACCATGCCACGGACAAAGTAGCGGAGATTTCCCcccattttcccccattctgatgcaCGATGTCATATCTTTATCTGAAGCtattgacctgtacctgcatgattttatgtattgtgctacTTTTTctactggtcattttatagaaattTAAATACAGAAGATAGCAaatcagtattttgaaaaagtcgTTAGTGAGGTAACAATCCTATCATACACCGTGACTAACCATGACAATCTAAGTGACAAGATATGATTTGCATAATTAGACACAACTACATCTTGCGTCCCTTTCCCTTGCTGGTCAGCGAAAAGTCAGGCTACAGTCTGTAACTGTTTACCCATATGGTAGGTTTATCTGATAACATGcccaaatgtataaaaagtaatATCTGGACTACAACATGGATTCAGTGCTCACTTctgtaatgataaaaaaaatgtgactttaaGAGTGTGACTCCCATTAGCTTTACTTCCATGTTTCTGTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442515 True 2213 lncRNA 0.37 2 10022537 10024885

Neighbor

gene id symbol gene type direction distance location
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding downstream 52378 9968451 ~ 9970159 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding downstream 61167 9939296 ~ 9961370 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding downstream 85364 9931449 ~ 9937173 (-)
stn1 obfc1 coding downstream 94560 9919822 ~ 9927977 (-)
sh3pxd2aa sh3pxd2a coding downstream 198829 9807172 ~ 9823708 (-)
morc3b LOC108258289 coding upstream 79647 10104532 ~ 10116972 (-)
cbr1 cbr1,LOC108428204,LOC107746284 coding upstream 95657 10120542 ~ 10123973 (-)
cryzl1 cryzl1 coding upstream 108327 10133212 ~ 10141577 (-)
LOC113537761 LOC108258610 coding upstream 192723 10217608 ~ 10236158 (-)
LOC113537273 kcnrg coding upstream 330341 10355226 ~ 10359434 (-)
G373398 NA non-coding downstream 57994 9962422 ~ 9964543 (-)
G373327 NA non-coding downstream 190212 9831607 ~ 9832325 (-)
G373317 NA non-coding downstream 196844 9825461 ~ 9825693 (-)
G373303 neurl1,neurl1aa,LOC107676877,LOC107746293,LOC107746052 non-coding downstream 222627 9793369 ~ 9799910 (-)
G373316 NA non-coding downstream 229916 9792282 ~ 9792621 (-)
G373649 NA non-coding upstream 59554 10084439 ~ 10084737 (-)
G373656 setd4 non-coding upstream 101940 10126825 ~ 10127889 (-)
G373657 setd4 non-coding upstream 103924 10128809 ~ 10129630 (-)
G373658 NA non-coding upstream 104947 10129832 ~ 10130057 (-)
G373678 NA non-coding upstream 167111 10191996 ~ 10246820 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 103758 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 1411696 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1590099 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1693511 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1755265 8261435 ~ 8267272 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 397267 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 846339 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 2054006 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2600166 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 3282828 13307713 ~ 13320530 (-)

Expression


Co-expression Network