G373656 (setd4)


Basic Information

Item Value
gene id G373656
gene name setd4
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10126825 ~ 10127889 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442548
TCAGGACAATGGTTCAGTAAGTCCAGATAGGGTGCCAGTGCAAAGACATCCTTCTCCAGTGAGAGGAAATCGCTCTGGGCATGTTCCATGTACACTGTACGAGTATTAACACTGCACCATGCCCACCGGACTGCATCCTGAGTAAACACTACCTCTACAGGCTGAGTGAAAATGGGCTGAAGGGACAAGAAGAATGGCAGAGAAGAGCAATAAAGCTCCTCAAACTGTTCTTTTTGTGTCACTGCCTTTTTTCGAACATCTAGGGGCAAGAGGTCCATGATGTCATTTGAGAAGTAAACTGGGCATGTATAGGATTTAGGGAGGACTTTAATGTAAGGGCTCCATTCTGCTGTATCTCCATAATATCTCTCAGCAATAAGGAAAGAACAAAGTGCAATGAGAGGAGATACTGGGGGCTTCC
>TU442549
TCAGGACAATGGTTCAGTAAGTCCAGATAGGGTGCCAGTGCAAAGACATCCTTCTCCAGTGAGAGGAAATCGCTCTGGGCATGTTCCATGTACACTGTACGAGTATTAACACTGCACCATGCCCACCGGACTGCATCCTGAGTAAACACTACCTCTACAGGCTGAGTGAAAATGGGCTGAAGGGACAAGAAGAATGGCAGAGAAGAGCAATAAAGCTCCTCAAACTGTTCTTTTTGTGTCACTGCCTTTTTTCGAACATCTAGGGGCAAGAGGTCCATGATGTCATTTGAGAAGTAAACTGGGCATGTATAGGATTTAGGGAGGACTTTAATGTAAGGGCTCCATTCTGCTGTATCTCCATAATATCTCTCAGCAATAAGGAAAGAACAAAGTGCAATGAGAGGAGATACTGGGGGCTTCCACCTGTACagacacaggacagagagaaaaaactaaaCAAGACCATTTGTACTGTCATCCCATCCCAATATAGTGATATAAAATGTCATGCTTCTTTCActatagtgcaaaaaaaaaaaaacaagacatgtTTATACAGAGTCTATGTAGTGTGTAATACACCACTAATCATAATCATTTAATGTATACATTCACACTTTTGTCCAGTTCAGTATTTCTCCTTGATCGGAAAGTTGGTGGAAAAGACCATACAATTAAATTAAGTGAGATATTAGCACCTCTTTATGTATTCCCCCATGTAACTCTTCAGAACTGAGCTTGTAGTCAGCAAACACCTCTCGGGTAAGGAAATCACCAAC
>TU442550
GGTTCTCTATGCAGAGGCCCTTTTTATACTACTGGAATAGTGTGAATACTGAAATATATTGAGAGAAATATTTTAGTCATCACTGCCACAGGTAACATTATCTGATGACACTGCAGCATTAAAGTTACAGCCCCAACACAGAGTTCTGGAAAGCCATAGCACTTTTTAGAGTTTAAAGTTTCGAGTTTTCTTTCTCTAACACAGCTGCTTCAAGCCATCACTTCTGAACAAGAGTTTAAATTCTCTTCCAAATAAAGCAAGACAAAGCATTTATTTTACCTGTACTTCAGGACAATGGTTCAGTAAGTCCAGATAGGGTGCCAGTGCAAAGACATCCTTCTCCAGTGAGAGGAAATCGCTCTGGGCATGTTCCATGTACACTGTACGAGTATTAACACTGCACCATGCCCACCGGACTGCATCCTGAGTAAACACTACCTCTACAGGCTGAGTGAAAATGGGCTGAAGGGACAAGAAGAATGGCAGAGAAGAGCAATAAAGCTCCTCAAACTGTTCTTTTTGTGTCACTGCCTTTTTTCGAACATCTAGGGGCAAGAGGTCCATGATGTCATTTGAGAAGTAAACTGGGCATGTATAGGATTTAGGGAGGACTTTAATGTAAGGGCTCCATTCTGCTGTATCTCCATAATATCTCTCAGCAATAAGGAAAGAACAAAGTGCAATGAGAGGAGATACTGGGGGCTTCC

Function

symbol description
setd4 Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine monomethylation and peptidyl-lysine trimethylation. Predicted to act upstream of or within methylation. Orthologous to human SETD4 (SET domain containing 4).

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442548 False 421 lncRNA 0.46 1 10127183 10127603
TU442549 True 779 lncRNA 0.41 1 10126825 10127603
TU442550 False 707 lncRNA 0.42 1 10127183 10127889

Neighbor

gene id symbol gene type direction distance location
cbr1 cbr1,LOC108428204,LOC107746284 coding downstream 2852 10120542 ~ 10123973 (-)
morc3b LOC108258289 coding downstream 9853 10104532 ~ 10116972 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding downstream 83570 9993701 ~ 10043255 (-)
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding downstream 156666 9968451 ~ 9970159 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding downstream 165455 9939296 ~ 9961370 (-)
cryzl1 cryzl1 coding upstream 5323 10133212 ~ 10141577 (-)
LOC113537761 LOC108258610 coding upstream 89719 10217608 ~ 10236158 (-)
LOC113537273 kcnrg coding upstream 227337 10355226 ~ 10359434 (-)
arl11 arl11 coding upstream 270012 10397901 ~ 10399251 (-)
mcf2la mcf2l coding upstream 312059 10439948 ~ 10526876 (-)
G373649 NA non-coding downstream 42088 10084439 ~ 10084737 (-)
G373629 NA non-coding downstream 101940 10022537 ~ 10024885 (-)
G373398 NA non-coding downstream 162282 9962422 ~ 9964543 (-)
G373327 NA non-coding downstream 294500 9831607 ~ 9832325 (-)
G373317 NA non-coding downstream 301132 9825461 ~ 9825693 (-)
G373657 setd4 non-coding upstream 920 10128809 ~ 10129630 (-)
G373658 NA non-coding upstream 1943 10129832 ~ 10130057 (-)
G373678 NA non-coding upstream 64107 10191996 ~ 10246820 (-)
G373714 NA non-coding upstream 127114 10255003 ~ 10268661 (-)
G373719 dleu7 non-coding upstream 160491 10288380 ~ 10289373 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 208046 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 1515984 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1694387 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1797799 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1859553 8261435 ~ 8267272 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 294263 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 743335 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1951002 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2497162 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 3179824 13307713 ~ 13320530 (-)

Expression


Co-expression Network