cab39l (cab39l,LOC107676861,LOC107718429)


Basic Information

Item Value
gene id cab39l
gene name cab39l,LOC107676861,LOC107718429
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10422152 ~ 10435367 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442650
ttttttaatttgagttATTAGAGTTATGCTTGCGAAACAGGGCTGTGTAACTTTTCAATTCCTACTTGACAACATGTTTACCTATCATGTATGAAATGTAGTAAACATCTGTTGTCACTTTGTGTATGATGTTTTGCAGTGAGGCTGGAGTTCACAATAATGGTTCTCGATTTGTACTATAGTACTAAAACTAGAGTTATGTGCTAGTACTGTAGTGTATCCAGTGCGCTAATATTCCTATAGGACCTACTATAGGAGTCATGTAGTTTAATCCCACTAATACTCTTTCTTGTACACGTTTATTATGTTGCAGTTTGGCGGTTCTGTGCTGTATCTCTGCAGTACTTCAGTGTATTTCTGTTCATTAGCTGGTATGTTAGCTTTTCATAGTGATTTTGGCATTTAGCTCAAACCTAAACAGAACAGTCGAGGACACGAACGTTCAAAACAGGTGccttttgttgtgttttaaatgtattcctgttttttttttttctcatgctttattttgtattttttaaacagatctTTCTAGGGGGagcttaatttaattttgttgttaattttaaatatgttctaGTAGAGCATATTTTGAATCGATTAAGCAGTGAACCTCTTAACTCGCTATATTTGAGTTACGCTGATGAAAACTTCATTCTTTCATCCTTTGCTTTCATTTGCTGCACTTGGTTGATTGATTCAGTTGTATGATTGTATCATTAGAATATTTGGATTAAGTGGAATTTGTATGCTGAGGTGGTCTTGACCCATGTTATCACATTTGCCAATTATGTGAAATTTGTTATATATCGATATACATACTGATTTTCCATACTTTTTCGTTTTCTGataatatttttactttgcTTATAAAATCATCGCCCTAAGAAACCAAAACTGGATCAAAATTCAGTGGTAAATCATTCTCAAATGTTGAGCAAATACATCACACACTATTGGCATTCCTTCTGCTCCTCCTAGTTTGAATTAGCATTCAGAGCTCAGATGGGCTCCGGGCTGTTCAGTATTGTGTAATGTAAAGTGAATCATGGAACATTAAACCCTTCAACAGGGGAATCATTCAACTATATTATACACCTGAGCCAAATTTATTCAATATCCTTACATCCTTACATAGACACATTACAATTAATGGAAATAAACGTTGAGATTTCAAGTCTGAAATCTTTCCCAATGCCACCCATGTCGCATCCTTCCTTCTTCAATGCTAATTGTACCATATCACCAATAAAGCAAAATTCAAGC
>XM_026931674.2
GTGGCAGGAGTCGACTCATCTGGAGCTTGTGATGTAAACCATCATGAATCGCGCTGAAATGAAGTCGACTCGTTTCGAGTGAAATTGTGCGCTGCcttcttaaaaaacaaattcCGCACGGTTTTAATTCGCTCATACGCACTTTCCGCTGACGTTTCTCTCagcaacacacgcacacacacacacacacacacacacacacacactgctggcgTGACCAGAAAAAGGGCTGCTCGGTAACAGTGAAGCAAGGAACAGCAGCGGGAGACTAAAACCGACCGCAAACAGTCTAAACAAGGCCGTGGCCGCGGTTCTGacgaaggagagagagagagagagacagagagagcgagactgAGCAAGAGAGACACTGGGCTCCAACCATGCCACTGTTTGGTAAATCTCACAAGAGTCCCACGGACATTGTGAAGGCTCTGAAGGACAACCTGTCCATCCTGGTGAAGCAGGACAAGAAGACAGAGAAGgcctcAGAGGAGGTGTCTAAATGTCTGGTGGCGATGAAGGAGATCTTGTACGGCACCAACGACAAGGAACCACACACGGAGACGGTGGCCCAGCTGGCCCAAGAGCTGTACAACAGCGGCCTGCTCATCTCCCTGGTGGAGAACCTGCAGGTCATCGACTTTGAGGGGAAGAAGGACGTGTGTCAGATCTTCAACAACATCCTACGCAGGCAGATTGGCACCCGCAGTCCCACAGTGGAATATTTCTGCTCCCATCAGGAAGTGCTCTTCATCCTGCTCAAAGGGTATGAGACTCCTCAGGTGGCGCTGAACTGCGGCATCATGCTGCGTGAGTGCATCCGGCATGAACCGCTCGCCAAAATCATCCTGCACTCGGAGCATTTCAACGACTTTTTCAGCTATGTGGAAATGTCAACGTTCGACATTGCCTCTGATGCATTCGCCACCTTCAAGGACCTTCTTACAAGACACAAGGTTCTAGTGGCAGAATTTTTAGAACAGAACTATGATGCGGTCTTTGAGAACTATGAGAAGCTGCTGCACTCTGAAAACTATGTGACAAAGAGGCAGTCACTGAAGCTGTTGGGTGAGCTCCTGCTGGACAGACACAACTTCACTGTGATGACGAGGTACATCAGCAAGCCGGAGAACCTCAAACTCATGATGAACCTGTTGAGAGACAAAAGTCCCAATATCCAGTTTGAGGCGTTCCACGTTTTCAAGgtgTTTGTGGCAAACCCTAACAAAACGCAGCCCATCATAGACATCCTTCTGAAGAACCAGACGAAGCTCATCGACTTCCTTAGCAACTTCCAGAAGGACCGCACGGACGACGAGCAGTTTAACGACGAAAAGACGTACCTCATTAAACAGATACGAGACTTAAAGAAACCCGCCTCCTAAACCTTAGCTAGCGATCACGTTATTAAGCACCTCATCTTTTtactgaggaaaaataaaaaaaaaaaaaaatcacaaaaatctattaacaataataattctatTTAAGATCTTAAACATTTGTCTTTTCTTAGTCATGCGGCTCGCAAGTGATAGTTTTCAATCACTGATGTTcagttattttcttttcttttttttttttttttttcttttcttttttttttttttttttaaactttctttcATAAGACATTTGTTAGTTTTATCATCGAGTTGTGTGCCACAAtaggatgtttaaaaaaaaaaaaaaaagaaagaaaacttaaaGGCAACCAATTTAGTTTCAGGAAGAACCAAAGCTGGTAGCAGCCTTGAGAGACGTGGGTGAGTCACGAGGACCTAAGAGGACGATTGACACTTTTGGTTTTTACATTATGATGAGCTcgtattttcacacacaccgaTCCGAGTGTAGTTCACACACCGGCAGTTTGGCCTCGCTCTTGTACAGTTTGTAGCTGTAGTAGTGGAGTTGTAGGAAGGGAGGATGCATTCCCCAGTTATTTATAAAACTATGATTTTCACACATTAGTAACTTCATTCTTGCAttcctttatattttttttttttttctactctaGCACCTCCTGTCACTGGTGGTATACGCtgaattttcttccttttcacgCACCTGTATGGCTTACTGCTGGCTCTGGATGGGTTtaaatttaccaaaaaaacaaatatatcagTCATGTTATccctgtttactttttttttttttcccttcttctcaGTATTTTACTTGTTGGGTTTCAGCCATGGATCAGGAGTGCAGTTTATCTTCCtgtatgctttttattttttgtttttttgcttttttttttttttttaatttgagttATTAGAGTTATGCTTGCGAAACAGGGCTGTGTAACTTTTCAATTCCTACTTGACAACATGTTTACCTATCATGTGTTTAAAGCTGGTTTTAGTCTCTAAGTGGGTGCCCTTTTATGAAATGTAGTAAACATCTGTTGTCACTTTGTGTATGATGTTTTGCAGTGAGGCTGGAGTTCACAATAATGGTTCTCGATTTGTACTATAGTACTAAAACTAGAGTTATGTGCTAGTACTGTAGTGTATCCAGTGCGCTAATATTCCTATAGGACCTACTATAGGAGTCATGTAGTTTAATCCCACTAATACTCTTTCTTGTACACGTTTATTATGTTGCAGTTTGGCGGTTCTGTGCTGTATCTCTGCAGTACTTCAGTGTATTTCTGTTCATTAGCTGGTATGTTAGCTTTTCATAGTGATTTTGGCATTTAGCTCAAACCTAAACAGAACAGTCGAGGACACGAACGTTCAAAACAGGTGccttttgttgtgttttaaatgtattcctgttttttttttttctcatgctttattttgtattttttaaacagatctTTCTAGGGGGagcttaatttaattttgttgttaattttaaatatgttctaGTAGAGCATATTTTGAATCGATTAAGCAGTGAACCTCTTAACTCGCTATATTTGAGTTACGCTGATGAAAACTTCATTCTTTCATCCTTTGCTTTCATTTGCTGCACTTGGTTGATTGATTCAGTTGTATGATTGTATCATTAGAATATTTGGATTAAGTGGAATTTGTATGCTGAGGTGGTCTTGACCCATGTTATCACATTTGCCAATTATGTGAAATTTGTTATATATCGATATACATACTGATTTTCCATACTTTTTCGTTTTCTGataatatttttactttgcTTATAAAATCATCGCCCTAAGAAACCAAAACTGGATCAAAATTCAGTGGTAAATCATTCTCAAATGTTGAGCAAATACATCACACACTATTGGCATTCCTTCTGCTCCTCCTAGTTTGAATTAGCATTCAGAGCTCAGATGGGCTCCGGGCTGTTCAGTATTGTGTAATGTAAAGTGAATCATGGAACATTAAACCCTTCAACAGGGGAATCATTCAACTATATTATACACCTGAGCCAAATTTATTCAATATCCTTACATCCTTACATAGACACATTACAATTAATGGAAATAAACGTTGAGATTTCAAGTCTGAAATCTTTCCCAATGCCACCCATGTCGCATCCTTCCTTCTTCAATGCTAATTGTACCATATCACCAATAAAGCAAAATTCAAGCATTATCAGTAA

Function

symbol description
cab39l Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction. Orthologous to human CAB39L (calcium binding protein 39 like).

NR:

description
calcium-binding protein 39-like

GO: NA

KEGG:

id description
K08272 CAB39, MO25; calcium binding protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
TU442650 False 1266 lncRNA 0.34 2 10422163 10423467
XM_026931674.2 True 3588 mRNA 0.40 9 10422152 10435367

Neighbor

gene id symbol gene type direction distance location
arl11 arl11 coding downstream 22901 10397901 ~ 10399251 (-)
LOC113537273 kcnrg coding downstream 62718 10355226 ~ 10359434 (-)
LOC113537761 LOC108258610 coding downstream 185994 10217608 ~ 10236158 (-)
cryzl1 cryzl1 coding downstream 280575 10133212 ~ 10141577 (-)
cbr1 cbr1,LOC108428204,LOC107746284 coding downstream 298179 10120542 ~ 10123973 (-)
mcf2la mcf2l coding upstream 4581 10439948 ~ 10526876 (-)
tubgcp3 tubgcp3,LOC107692132,LOC107746265 coding upstream 94157 10529524 ~ 10561707 (-)
sox1b sox1,LOC107746263,LOC107567792,LOC105927502,LOC103140368,LOC107676867,LOC107692134,LOC107718482,LOC103479789 coding upstream 261091 10696458 ~ 10698691 (-)
arhgef7b arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107676887 coding upstream 371068 10806435 ~ 10838961 (-)
eif5b eif5b,LOC102778822 coding upstream 415009 10850376 ~ 10870096 (-)
LOC113537663 NA non-coding downstream 129574 10290637 ~ 10292578 (-)
G373719 dleu7 non-coding downstream 132779 10288380 ~ 10289373 (-)
G373714 NA non-coding downstream 153491 10255003 ~ 10268661 (-)
G373678 NA non-coding downstream 175332 10191996 ~ 10246820 (-)
G373658 NA non-coding downstream 292095 10129832 ~ 10130057 (-)
G373762 NA non-coding upstream 60269 10495636 ~ 10564924 (-)
LOC117596123 NA non-coding upstream 241265 10676632 ~ 10797197 (-)
G374040 NA non-coding upstream 493100 10928467 ~ 10929554 (-)
G374039 NA non-coding upstream 494372 10929739 ~ 10933407 (-)
G374091 sept3 non-coding upstream 632364 11067731 ~ 11067952 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 503373 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 1811311 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1989714 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 2093126 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 2154880 8261435 ~ 8267272 (-)
lipt1 lipt1 other upstream 435857 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1643524 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2189684 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2872346 13307713 ~ 13320530 (-)
G375428 NA other upstream 3003852 13439219 ~ 13439535 (-)

Expression


Co-expression Network