G374370


Basic Information

Item Value
gene id G374370
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11593966 ~ 11594981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443391
GGAAATACAGCATTTATAAACCCAAAAATATTTAAGGCTGTAATCAATCCTAACGGTCCTTCAGCAAAGTAAAGGGTGTGACTTCATTTTTAACGCATTTACAAAATTTCATGAAATcctttttatgctttttcatAAAAGTTGCATACATTGTACAGGATTTTGGGTGAACTagacttcatttatttattagctacatTATCCTCATAGCTTCCTCATAGTGCAAAACGAAGCAAAGAGAGATCTGGCTGATGGACATATCTATAACCAAGGACACAAAAAATGATGCTTTCCAACTTTTCGTTTAAAAGATACAGTGAATCATTGAAAAAGTCAGATTTTATTTGGGACAGGGaaatccttctttttttttatttccattattcATTCGGCCCCCCTTGCAATCACATTACTTTAaatcagtgaagaaaaaaacccttctcAGTGTAATTCAAACCATTATAACTCACGCATGTATCAGCTTACATAGTGTGACTATGTACATGGTCCTGCTCCAAAAAACAGTCCATCCACATATTTCTACATACCGGTGGATTCCTTGTTTCCCCCCTAATTTAACGCATACGAAAATGAAGGTAAGGAGATGAAAGGAAATAAGCAAGTATTAAGTTAATATGTAGGAAAtgtctgttagacagctgatcTCCAATCAGCTCCTGTGCACACACCAAATTGATTTCAACAGACAGAAACCAAGAGTAGATCAGCTCTTACACATATGCACCCAGGGTTCTTAAAGAAACATTTCACCCCAAAAAACTAGCACTTTTGCTAACTTTGCTTCATGTACTTGAAAAGTACGATCTTTCACTCATCTGTAGCAGTGTTAAAGTTTTAAGGTGAACCACTTCTTTATTCTTCCCTCTTATTGATGAGGCACAAAGAAAGCATCGAGGCATAAATCAATAGTAAGAGTGCgaattaaaaatgataagagataaataaaagcaaGGAAAGCTGGCTGGTTGATAGCACACAaaaatttcaacaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443391 True 1016 lncRNA 0.35 1 11593966 11594981

Neighbor

gene id symbol gene type direction distance location
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding downstream 41244 11546974 ~ 11552722 (-)
spp2 spp2 coding downstream 50269 11539380 ~ 11543697 (-)
trnar-ucu_14 NA coding downstream 120995 11472880 ~ 11472971 (-)
pld6 pld6 coding downstream 122423 11467404 ~ 11471543 (-)
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding downstream 129344 11448379 ~ 11464622 (-)
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding upstream 71928 11666909 ~ 11690520 (-)
vps8 vps8,LOC107699090,LOC107719737 coding upstream 174865 11769846 ~ 11866324 (-)
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding upstream 296693 11891674 ~ 11937127 (-)
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding upstream 346171 11941152 ~ 11943095 (-)
LOC113537469 LOC108258698,LOC108435966 coding upstream 350853 11945834 ~ 11953213 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 233545 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 351129 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 356535 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 446293 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 454155 11139183 ~ 11139811 (-)
G374371 NA non-coding upstream 211 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 74012 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 157593 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 339553 11934534 ~ 11943075 (-)
G374680 NA non-coding upstream 368823 11963804 ~ 11964781 (-)
lipt1 lipt1 other downstream 721410 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1158599 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1675187 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2983125 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3161528 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 483910 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1030070 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1712732 13307713 ~ 13320530 (-)
G375428 NA other upstream 1844238 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2377355 13972336 ~ 13980251 (-)

Expression


Co-expression Network