G374495 (c26h3orf70)


Basic Information

Item Value
gene id G374495
gene name c26h3orf70
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11752574 ~ 11755115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443528
GATATAAGAAAGGGGTTTATTTAAAGGCAAGATAAACATTTGTGTATCTACAGTACATATTTATAGCTACAGTATTATTCCCTGATATAAAACTGCAGAGATACAGGGACACCCATTTATTTATCCACCAGCAGGAGAGGTAATCATACAAATAATTGAGTGTGGGGTTCCTCAGGGCTGCATGACAGGTCCATTAGGTTTTCTACATAAGCAGTTTAAAAATGGACTTTTCTGCTCAGCCAGTGACAAAGTTCTATGCTTATAAACAGAGACGCTATTATCACAGACTGGAGCCATCATCAGAGACGAACAGGAGTGGAGTGTCAACAAAAGTTTAGTGTCCACTCCAGGGAGGACAGAAACAGTGATCCTTAACAGTCTCTTTCTTAATGCAGTTGCACAACTGTTTCAACTGTGATTTAAATACAATTGTAATCCCACATCAGGGATTTCTGAACCCAAAATGAAAGTACTGTACAGTTGTATAATGCAGTGAAAGGGATGGTTAGATCACTTTGTCCTGGGCATCATTTTAATCTCATTTACGTCTGAGACTAGCTAAATCATCACGGTTATATCAGACAGTAGCGATTTCATGCACTTGCATTAATAATCAGTGGTTGTCGGCTGGGCTGAAGTGGTTTTTAATGCTTGGTATTAAATTCTGTTGGCTCGTAGCTCTCAGGTCCATGCAGGCTGTGCTTTTACGTGTGGGCTGCCAGCTTCAAAGCACTCTAAAATGTGTCTCTTAGGACGTAGAGATGACCTCTGCCCACGAGTGCCCACAGTAGTATAAAATAGATAATCACTTCCATCCAAAGACAGTACAGTGAGTTCATCATGTGCTTAGGTCATACATCATTGGTTATTAAATAGGCTGTGAGTATTTTGTTGGGGGAAAAAGGAGCATGGCCAATAAACATCCTCAAAGAAATAATTGCTGCTCTCTGAACTAGAGCTTTGATTTGGTTTCAGTGATGACAGCGGTGTGGTAGCTTTCATACTACTACACAAATGGTTCAAAGTATCCACACTGTGCTTTAAGGAGGACATAACACACCATCTCACCCCTTGAAGTTCTGCTGATAATCAGTTCTTTGAAACTACCCCTAGATCTATATCATTAAATGATTGTCAAGACATTGGAATTCATTCTGCTAAATCTCCTGAAAGCTTCAGGGCTCTTCACCGTTGAGGAAGGAAAAATTGAAAGGAAGCTGTAAGTCAGTACTCTGTGGAGACTTGCGAATATGTGGTCTTTCTTCACATCGTGTCCTTACAGTCTTCTGAACTCATGCATGATTTAGTCACACTTCAAATGGTGCTTGCTTAAAAGAGACTGAAGAGCTTCTCACCCTGTTCTGCCCTTCTCTCTcaattttttccacttttttctctcttctacAGAAGATGACATTTCATATTCTCACTCTATTGCCTCCTTTTATTGCCTATCATATTCTCCTCCATTCGTTTGTgatgtatttaatattcaggtccttggagagagagaatatccATACAAGGTTATTCCTGTAGAGTAAGCACTAGCTCTTCTTGTTTACTGAGGAAATGTGCGCTTGTGTATGTGTCacaattcattttaaactcGCTCTTTTAGCCTGTGCAGAAAACCTGCATAACAGCTTCGTTTGGCCATACGTGGCACTACATACATGCATGAACGTATTTGTGAAATCTACTGTGTATAATCCATAGCAGGGTCACCATGCAAAGAGGGGACTCGTGTATAAAGGACATGAAGGGTGTAGGAGCTGACTGACAGGAGGACCAGTGAGAAGGCTTCCATGTAATTATCACCATGTGACCAGTTGGCTTTTAGGTTGCGCTCTTGTTTTGCCAACCAACTTGCATCCTCAAGTTGAAGACTGTCGACTTGGACGGCGAGAGCAGAGTGCATTCATCCTGCTCCCAGAGGCTCCCAGGACTGGAGTTGCCATCTGTGCTCAATTCATCGTCGTCCTCCTCATcgtcctcctcatcatcctcacaGGAGTCGTCCTCACAAGACTCCACGTAGTGAAGACCCAAGGCGTTGATCCCAGAATCCTCTGAGCTGGATGGTGAGGAGCAGTGGTCCATTTTGGGACCCTTTTGGCCTTGCGTGGCTGGAGTTTGGGCTACTGGGGATGGCTGGTTTTGAGTGTGCTGATTGGGCGGCTTGGCTGGTGAGGCCGGTGCCCTCTCTCGAGGAACAGGCACTGCTGCTAGAGGCCTCTGAACGTAGCACATCTTGCCATTGATCCGTTTTACAATGTAGTCGTCGACAAAAAGGTCAGAGATGATGCAGAATCTAGGGGACTCTGGGCAGGGTGGAGCTCTGAATTTGGGGGCGGTCCTGAGGAGACGCTCAGTCAAGGAGATTGACAGGTTTATGGTGTCGGTGTGATCTGAGGGTGAGGCAGGGACTGGTGTGGTGGGAAGCTGGCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443528 True 2453 lncRNA 0.44 2 11752574 11755115

Neighbor

gene id symbol gene type direction distance location
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding downstream 62054 11666909 ~ 11690520 (-)
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding downstream 199852 11546974 ~ 11552722 (-)
spp2 spp2 coding downstream 208877 11539380 ~ 11543697 (-)
trnar-ucu_14 NA coding downstream 279603 11472880 ~ 11472971 (-)
pld6 pld6 coding downstream 281031 11467404 ~ 11471543 (-)
vps8 vps8,LOC107699090,LOC107719737 coding upstream 14731 11769846 ~ 11866324 (-)
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding upstream 136559 11891674 ~ 11937127 (-)
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding upstream 186037 11941152 ~ 11943095 (-)
LOC113537469 LOC108258698,LOC108435966 coding upstream 190719 11945834 ~ 11953213 (-)
ubac2 ubac2 coding upstream 201621 11956736 ~ 11984895 (-)
G374442 NA non-coding downstream 83318 11668993 ~ 11669256 (-)
G374371 NA non-coding downstream 156335 11595192 ~ 11596239 (-)
G374370 NA non-coding downstream 157593 11593966 ~ 11594981 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 392153 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 509737 11238241 ~ 11242837 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 179419 11934534 ~ 11943075 (-)
G374680 NA non-coding upstream 208689 11963804 ~ 11964781 (-)
G374727 NA non-coding upstream 337397 12092512 ~ 12092736 (-)
G374885 NA non-coding upstream 403593 12158708 ~ 12158915 (-)
G374935 NA non-coding upstream 567849 12322964 ~ 12323575 (-)
lipt1 lipt1 other downstream 880018 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1317207 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1833795 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3141733 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3320136 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 323776 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 869936 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1552598 13307713 ~ 13320530 (-)
G375428 NA other upstream 1684104 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2217221 13972336 ~ 13980251 (-)

Expression


Co-expression Network