G374680


Basic Information

Item Value
gene id G374680
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11963804 ~ 11964781 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443741
AAAggatcataaattaaattaaagccaTGGAACTATTGTGTTGgtaaatatactatatggccaaaaatttgtggacacctgaccatcacacccatatgtggttcttcactaaactgatgccacaaagttgaaagtacacgattgtctagaatgtctttgtatgctgtaacattacaatttcccttcactggaactaagaggcccaaacctgttccagcatgacaatgcccctgtgcacaaagcaagctccatgaagacatggtgtgttaaggttggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccctactgaacacctttgggatgaactggaacactgactgcaccccagggctcctcgcccaacatcagtgcctgatctcactaatgctcttgtagctgaatgaacacaaatgcccacagccatgctccaaaatctagtggaaagccttcccagaaaagtggaggttattataACAGGAAAAGGGACTAattctggaatgggatgttcaacaaacacatatgggtgtgatggtgaggtgtccacaaacctttggccatacagtgtatgtaataaagttacaataacctgccACAAAATCATGGTAGTATCATGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443741 True 632 lncRNA 0.44 2 11963804 11964781

Neighbor

gene id symbol gene type direction distance location
LOC113537469 LOC108258698,LOC108435966 coding downstream 10591 11945834 ~ 11953213 (-)
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding downstream 20709 11941152 ~ 11943095 (-)
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding downstream 26677 11891674 ~ 11937127 (-)
vps8 vps8,LOC107699090,LOC107719737 coding downstream 97480 11769846 ~ 11866324 (-)
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding downstream 273284 11666909 ~ 11690520 (-)
dachc LOC108259061,LOC108435962,LOC107732708,LOC107602747 coding upstream 32230 11997011 ~ 12061385 (-)
dis3 dis3,LOC107699072 coding upstream 128541 12093322 ~ 12107492 (-)
dlx2b LOC108258656 coding upstream 168694 12133475 ~ 12164139 (-)
ppp1r9alb LOC108258654,LOC105911690 coding upstream 227440 12192221 ~ 12215715 (-)
kcnq5b LOC108258980 coding upstream 266939 12231720 ~ 12336307 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding downstream 20729 11934534 ~ 11943075 (-)
G374495 c26h3orf70 non-coding downstream 208689 11752574 ~ 11755115 (-)
G374442 NA non-coding downstream 294548 11668993 ~ 11669256 (-)
G374371 NA non-coding downstream 367565 11595192 ~ 11596239 (-)
G374370 NA non-coding downstream 368823 11593966 ~ 11594981 (-)
G374727 NA non-coding upstream 127731 12092512 ~ 12092736 (-)
G374885 NA non-coding upstream 193927 12158708 ~ 12158915 (-)
G374935 NA non-coding upstream 358183 12322964 ~ 12323575 (-)
G374961 LOC108258298,LOC108258985,LOC108258304 non-coding upstream 471991 12436772 ~ 12437220 (-)
G374962 NA non-coding upstream 472575 12437356 ~ 12437686 (-)
lipt1 lipt1 other downstream 1091248 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1528437 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2045025 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3352963 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3531366 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 114110 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 660270 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1342932 13307713 ~ 13320530 (-)
G375428 NA other upstream 1474438 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2007555 13972336 ~ 13980251 (-)

Expression


Co-expression Network