LOC113537246


Basic Information

Item Value
gene id LOC113537246
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12625051 ~ 12630403 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU444162
tagattTCTGTCTCGATGGATGAGCTGTGTACTCTGTCAAATATCCTTTTTAGATGAACCCATCTTCCAGTAACAGAggttttagataaaaaaaacattcagtgcaATCGAGGTCTGGTAATTAGCTATTGTAACAAACCAAGAGTTCACTAGGGAACATTTTCTGATTAACATTTTTCATCTGATTAAAAACCTCATCAGTCACAAAAGTCTGCACTGTGCATTTCATTCAGCCAGATATGCCAAAAACAAGCAGGGTTCTGTACATCCCTTCATATTAACACCAAATACAAGGTTGAAGTTTACACAGTTTCTTATTTAAGTTGTCAGTTCCACCTTAAATACTGATGCAAACACAATATTGTACCTGTAGAGAGCACTCATTGCTCATTTCTAAAAACATGATCCATGTGCAGAATTGTAAAGCATAAATGAATTTGCTAATTATACATCTTGCCCAAATGTATTATGGTATGAGTTGTTTTCGGG
>XM_034299957.1
ATTAAATATACTGAGTTCCTATACCAGTGGGCTGAAGGACCTGACAGTTGTGAAATCATCAGGGTCTCTCCATTCCATCCTCTTTGATCCTGACGTTGATGTGGTGGTTTGCTTGTCATTTACATCTTTAAGGAATGAAGACTCCTACCTAGCAGTTATACAAGACTTTCTGAACTGTGAAGGGTTTACAGTGTTGGGGcaaccaagagagagagagttcccTCTCCAAGCAACACAGCCTTGGTTCACTTTTCCTGACATTTCTGTGAGCATGAGGCagaatctttctctctttacaaGTTTTTCAAAGGCCAATAAAAATGATAAGAGAGTCAAGTTCATCATTGCCTCCATATCTGACCCGAGCAATCCAGGAACCTCCATCCAACTTTATCAGAAAGGCATTCTGAAAGATCCTAAGTTCCAGCCTGTATCCAAACCGCCTCTACCCATGGTGGAGACCTATGATGAGAAAGTCCTACTTAAGCTTTCAAAATCCCTAACCGGAGAGACAGTCCAGTTCAGAGTTGAATACAGGATGACACCGCCACCTGATTCAGCAGCTGACATTGACGAATGGACAGTCACAGACACTTCAGGTGCACAGACCAGCCTCACATTGTCTGAATTAAAGCCAACAGACCAATACTTGGTCCGATACAGAGCTGTTAGTGAGGTGGGAGTGAGTGAGGCCAGCGactctgtctccatctccttCCCTGGGAAGCCTGATGTGGGCATGAGTGAAGCCAGCGACTCTATCTCCGTCTCCTTCCATGAGAAGCCTGATGGGGGAATGAGTGAAGCCAGCAACTTTCATCAGAAGCTCAATCTTAAAGTGGGCCAGTCATGGAACTTCTTCACATCTTCCCTCTTTAATGAACTAAGGACAAAAATAATGACCAGTATGGGCATGTCACGATGGTCTCTCTCTACCATCAAGTCAGAGGTTACAAATGTTGTCAACAGTCCTCGCATTCCTTACATTGACACAATTCCTGGTGGGCTGAGAGCAGGAATGGCTTTGTATTTCCAAGGTGTTGTTTTTGCAACAGGAGAAGTCTTTTCATTTAATCTCGTAACTGGGCCGAAGGTTGATGATGACATCGTTTTTCACTTCAACCTTCGCAACAATGACCTGGTGGTCCAAAACAGCCGCAGGAATGGGATGTGGGAGAATGAAGAACACACATCAGGGTGTCCCATTCCCAAAGGATCAGCCTTTGATATCTTTATTGTGGCCAAAAGAGAAGGTTATGAgGCATATGTAAATGGAAAGAGGTATTGCCTGTTCAAACACCGCATGCCAATGGAGAAAGTGGCCACACTTTACATTTGTGGCGACGTCATCATGAACATTGTTGGTATTGTTGAAAACTGGAGCACATCTACTTTTGCTAAGGAACTAAACTCTGGCATCTCACGCACAAAGCTTTCTAACATCCAATTTGATGTGCCACATCCAGTCTGCAACCCTAGCAAACCATATTCAGGATCAATCCCTGGAGGCTTGAGACCTGGTGTGGCTTTATTCTTCCAAGGGGTTGTTCCATCAGATTGTGAACGCTTTCAAATAGATTTGCAGACTGGGCCAAAAGACATCGCTCTCCACTTCAACCCCCGCATGCACTCTGTGGTACTTAACAGCTGCAGGAATGGGAGATGGGAACTCCAAGTGGATATTCAGGGAGGCCCATTTGTCAAAGGAGGAGCCTTTGATATCATCATGGTTATTAAACCAGAAGGCTATGAGgTGATAGTGAATGGCCTGCTGTATTGCACGTTCAATCACCGTATGCCAGTGGACAAAGTGACTACAGTTCGCATTTTGGGAGACGTCTTCATGAACATCTTCAGCATTATTGAAgtgGATGATATTAATCTGAAAGTCACCATTCCGGCCAATATTTGAGGATTCGAATCTTCCCCAAAAGCAATTCCCTTGACAATTTTCAAgagatttttttgttatattctgCTCAAGTGTATCAGACAACAGACCATGggcatgatttgtttttttattaatcagttattttttttcctcttaagcATTTTTATGAGATTTTTGTAGCTTATTATTGTTGGAAATGAATGCTATATACTCTTTACTACAGTATTATTGTACTTtaattatagtaaataataCAGGTAATTTGCTTTAGTCTATATATAGACACCTTTGCAGCAGAAATTAGAGTAGTCCATGGCtaacacagtaaataaatgtagattTCTGTCTCGATGGATGAGCTGTGTACTCTGTCAAATATCCTTTTTAGATGAACCCATCTTCCAGTAACAGAggttttagataaaaaaaacattcagtgcaATCGAGGTCTGGTAATTAGCTATTGTAACAAACCAAGAGTTCACTAGGGAACATTTTCTGATTAACATTTTTCATCTGATTAAAAACCTCATCAGTCACAAAAGTCTGCACTGTGCATTTCATTCAGCCAGATATGCCAAAAACAAGCAGGGTTCTGTACATCCCTTCATATTAACACCAAATACAAGGTTGAAGTTTACACAGTTTCTTATTTAAGTTGTCAGTTCCACCTTAAATACTGATGCAAACACAATATTGTACCTGTAGAGAGCACTCATTGCTCATTTCTAAAAACATGATCCATGTGCAGAATTGTAAAGCATAAATGAATTTGCTAATTATACATCTTGCCCAAATGTATTATGGTATGAGTTGTTTTCGGGTTATTACCAATTGGAAAACGATTTACTtcttgattaaaacattttaacaatgtACTGATTAAAATCATTGAATTTTGACA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU444162 False 489 lncRNA 0.35 1 12625131 12625619
XM_034299957.1 True 2798 mRNA 0.41 10 12625051 12630403

Neighbor

gene id symbol gene type direction distance location
slc2a15b LOC108258984,LOC108435958,LOC107708658,LOC107704318,LOC107602731,LOC107699075 coding downstream 2701 12609053 ~ 12622350 (-)
fgf8b fgf8,fgf8b,LOC108258517,LOC107699081,LOC107568785,LOC107602739,LOC107738466,LOC107704317 coding downstream 32603 12585726 ~ 12592448 (-)
poll poll coding downstream 46658 12571039 ~ 12578393 (-)
wbp1lb LOC108259041 coding downstream 54753 12563004 ~ 12570298 (-)
as3mt as3mt coding downstream 78628 12536497 ~ 12546423 (-)
LOC113537226 NA coding upstream 13536 12643939 ~ 12659493 (-)
pnpla4 pnpla4 coding upstream 113858 12744261 ~ 12751839 (-)
cd99 NA coding upstream 690860 13321263 ~ 13348834 (-)
trnar-ucu_15 NA coding upstream 693679 13324082 ~ 13324173 (-)
trnar-ucu_16 NA coding upstream 695114 13325517 ~ 13325608 (-)
G375028 NA non-coding downstream 39454 12585160 ~ 12585597 (-)
G375027 NA non-coding downstream 40392 12584445 ~ 12584659 (-)
G375018 NA non-coding downstream 64226 12560601 ~ 12560825 (-)
G375001 NA non-coding downstream 98232 12526620 ~ 12526819 (-)
G374963 NA non-coding downstream 183512 12441321 ~ 12441539 (-)
G375097 NA non-coding upstream 65612 12696015 ~ 12697218 (-)
G375119 NA non-coding upstream 111022 12741425 ~ 12741652 (-)
G375121 NA non-coding upstream 111917 12742320 ~ 12742520 (-)
G375141 NA non-coding upstream 202473 12832876 ~ 12833354 (-)
G375329 NA non-coding upstream 637479 13267882 ~ 13271621 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 541002 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 1752495 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 2189684 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2706272 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 4014210 8591407 ~ 8610841 (-)
gyg2 gyg2 other upstream 677310 13307713 ~ 13320530 (-)
G375428 NA other upstream 808816 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 1341933 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 1352342 13982745 ~ 14016151 (-)
G375826 NA other upstream 1396891 14027294 ~ 14030879 (-)

Expression


Co-expression Network