G375614 (LOC108259021,LOC107655163,LOC107580539)


Basic Information

Item Value
gene id G375614
gene name LOC108259021,LOC107655163,LOC107580539
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13832468 ~ 13834980 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU444799
GcctttttatatttagtttattgtttCAGTCATACAAGAAAACCATGaggaatttaaaatatacaagtgtgaagaaaataaatcacatcatTTAGTTCAGAGGGGAAAGAGTTGGTTAAAAATTCAGAGTGAGAGAGTTTGTTTAGTACAGAGACAGCCATATATTTAGGGTCCTATTGCTATCTGATAGAGCAAAATGGAAACAGCTGATTTTATGTGAGCTAAAACAGTTTACATCACACAGGAAACTGAAACTCTGCTTACTGAAAAACACCATGAGACAGTGACAGCAACCACTCGGAAAAATATATCCAGTGGGAGAGATCAGAAAAGGACAACGACCGGGAAAACAGTCAGTGGGTTGTTAAGATGAAATGGCAGTGAGTTAAAAGAGGAGCAATGTCCTCCTTGTCCTCCATGTCATGCAACAGGTCTCCACATTTCAGTCACATTTCTCCTCAAACAGGTAACATTACCTTCCCTGCACATGCCTGCACAAACCAAACCACCCATGTCTGGGCATGCCTGTGTGCACATGATATCAAAACACGAGTGGGTTTTTACTGTGCATTCTTAACAAACCTTTCTGAATTGTGTAACCTTAATAACATGAGTGCCAAATGCTTCTGATGCTTGCTATTCATTAAACTTCTGACAAACACACTACGTATTTATGCTAATCTGTGTGGACTGATATTATCACACATCTACAAGGCCCACTCTGGGAAAAACAGGTACTGAGCTGTACtggggccaaaaaaaaaaaaaaaaaaagatattagaCTGTATCATTGCTTCTCAATATTGTGGTATCCTCATTAGTACATCATTAGTACCTGTAGTATGCATCCTTTGTCTAACAAAGTGGATGTGGTTTacctttaaacacatttaaggCAGACATTTTTGGCACCCTGACAgattaacacactgaacaatTTTCATTCTCTTGGGTCTTCTTAGGGCTCGTGGCACTGGAATCATCTCCAAACTTCCTTTCCGTGCATCACCCATGGTTCTCAATTTCTCTCTACTTCTGACACACCTCTGACCCATGAAAGGGGTCAATctgttgaatcaggtgtgtcaGGGTGGTAGTGGGTCCCACAACTGGAGCTGAGAACCCCTGATATAAGGTATGACAGgaattttaaaggtacactacactGCTACTTCACTTCCCTAGGTGAATGATACATGCTACAAGTACAAGTCGTACACTCTTGTGGTTATACAACCCCAATGACAAGCATTAGTACCTTTTTTTGAGAGTACACTCTCTGAAATAATGGTTCCAAACTGTGCTGTTGCTTGCCACTGGTGTGGTAGAATCAAGGGTACATCCTTTATGTATCATTCccagttaaaaataatataaggtacataattggaccttgAGGACAAGTGATTAAAAAGTGCACCACATGCActtttccaggtaaaagatacatactgaAGGTAcaagatgtacccttgatggtaccactcaagtgacaaggaaaagtacagtttggtaccatCATTTGTGAGAGTACACGTGTAGCAGTGCTATGAAACTGGTGGAAATTGGCACGGGTtccaacaacaaaaagaaaaaaagcaggtcCACCTCGCCTCACTCTCTGCAAAACACATACTCGGTGTAACTGGTCCAGATTTTGTCCTCATTGGGGTCGCTGCTGGTGTACGCACACGTCCCTGTGGAGTTGCACGCCACCATGTGGAAGCCCACCTCGGCCAGCCGGTCGAACGCCTGCTCCAGAAAGTTGTACTTGAGGTAATAGCGGGACGTGTACCTCTCCGGGGGGCGGTCGGGGTCCCTGCTCTCGTTCAGCGTGTCGCCGAACACCTCCTTGGCGAGCGAGGTTTTGCCGCACACGGTAATCCGGGCCACACGGCGGAACTTGGCGTCGTTCTGGATGTCGCGTCCGATCGTGTACGAGCCGCGGTAGCCGACGGTGATGTAGCCAGACTTGCGCGCTTCCAGAGACGGAGAGCGCGGCCCGATGGCGCTGCTGCCGCTGGCACTGGCACTGGCGAGGGCGCACGACACCGCTGCTTCCTCCGGGTCGCTGTGAAACGCCTCATCCCCGATAGAGTTCTCCTTACTGACCTGAGGAGGCCGGAGACGACGTGCCAGATCGGGCAGCTGGAAAAACTCAGCCTCTTTCTGCAGACTCGCTCGCTCTTTGAAGTACTCGGGCAGCGCCAGGTTCTTGTCGCGCAGGTAATCCAGGATGTACCGGAACAGAAATCCGTCCCGGTCTATAAAGTAGCGCCCTTTGCTGTCCCGGGTCAGCTGGGACGAGCTGTGCTCCTGAAACATGCTCCAGAGTAAAGAGTTCGGGACGGAGAGTAAAGTTGAGTGGCGCGTCACGTAAATCTGTCCGCCGACATTCAGCTCGATTATTTCAGGGAAAGCAGATGTGGAGCTTTCCACTCTCCTTTCAGCTGCTTGAGCCATTTCTGCTACAACATCTGTCTCCCAAAAGCCCAGCTTTATCTTCTCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU444799 True 2513 lncRNA 0.47 1 13832468 13834980

Neighbor

gene id symbol gene type direction distance location
cldng LOC108258891 coding downstream 354210 13476472 ~ 13478258 (-)
creb1a creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602 coding downstream 405314 13417325 ~ 13427154 (-)
trnar-ucu_18 NA coding downstream 504325 13328052 ~ 13328143 (-)
trnar-ucu_17 NA coding downstream 506384 13325993 ~ 13326084 (-)
trnar-ucu_16 NA coding downstream 506860 13325517 ~ 13325608 (-)
lmo7b LOC108259086,LOC108437774 coding upstream 32708 13867688 ~ 13902247 (-)
tpt1 tpt1,LOC107598740,LOC107691594 coding upstream 201450 14036430 ~ 14042668 (-)
LOC113537775 NA coding upstream 202751 14037731 ~ 14037862 (-)
LOC113537774 NA coding upstream 203548 14038528 ~ 14038598 (-)
LOC113537776 NA coding upstream 203874 14038854 ~ 14038986 (-)
LOC117596119 NA non-coding downstream 1897 13829181 ~ 13830571 (-)
G375466 NA non-coding downstream 311545 13520563 ~ 13520923 (-)
LOC117596174 NA non-coding downstream 325335 13504304 ~ 13507133 (-)
G375455 NA non-coding downstream 326903 13498643 ~ 13505565 (-)
G375420 NA non-coding downstream 415372 13416822 ~ 13417096 (-)
G375615 NA non-coding upstream 1118 13836098 ~ 13836533 (-)
LOC117596131 NA non-coding upstream 18096 13853076 ~ 13860774 (-)
G375864 NA non-coding upstream 243984 14078964 ~ 14085441 (-)
G375871 NA non-coding upstream 286518 14121498 ~ 14125258 (-)
G376038 NA non-coding upstream 487204 14322184 ~ 14340390 (-)
G375428 NA other downstream 392933 13439219 ~ 13439535 (-)
gyg2 gyg2 other downstream 511938 13307713 ~ 13320530 (-)
LOC113537246 NA other downstream 1202065 12625051 ~ 12630403 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1748419 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 2959912 10871224 ~ 10872556 (-)
klf5a LOC108259069 other upstream 137356 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 147765 13982745 ~ 14016151 (-)
G375826 NA other upstream 192314 14027294 ~ 14030879 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other upstream 271226 14106206 ~ 14180614 (-)
dand5 LOC108258523 other upstream 439347 14274327 ~ 14276537 (-)

Expression


Co-expression Network