klf5a (LOC108259069)


Basic Information

Item Value
gene id klf5a
gene name LOC108259069
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13972336 ~ 13980251 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU445042
ACTGCTTTAGCTTTTTAATGCTAGCGTTTGTACGATTTGAGGACACGGTTGATGgctgtaactttttaaaaagcaaaaaaaaaaaacagctgcgTTCGTTTGTTGGCACTCATTCAATAAAGACTGCTGCTGTCTCTTAAACCTACACTGCCAGTAAAAAGCTTTCATGCTATACTTATGGTGTAGGATTTTCAGTTAAACTTTAAGTGGACTTCTTTTAAGGAAAATGGATGAGTGAATggacaaatgtgtgtttgtctctgacTCTTTCTGAATCTTTTATCTAAAGCAGGGACTCGCAAACTTTTTGCAGTCagagacccctttaactgtaaaagacaaataaaataaatacgtTTTCACAACCATAATCCAacaaatattacacacattattcaaatgtgtacagtaatttTTCAGATATAATTGGAGTTTTGAACTTTCAACCAATTgaattttgtcacattttattaaaatcgtCATTAGATTCATGTCGccattatttataggcatagCAACTTTTTTATGTGGTGATTTCCACAAAAATCAGAGGCCTGACGAAGCTTTTGAGGTTCCCTGGACCAAACTTTGAGATCTAACTTACCAACTTACCCTCCAAGTGCACCTGAGtttaataaagcacttattACGCACCTAATTCAGtcagttcattcattcttaAATCCAGATTTAGATTTTGATGTAACACTTGAgtatttttgcttatttcaatGCAACATCTGGACCCTAACATTCATTCCAGATGTTTAGAAGCTTTTCCCTGGCAGTgtgaatatattcatataaaaaaacattgtttttttttaactttgaaaACTTCTCAAACATCATTTTCCCCTGACATCTTGTTGCATTGCAATGAACAAGTTCTCCCTTCTCATCCGTCGCTAACAAAACAGTTCGTTCATGTTCTGCTTTACCCAGAATTCCATGGGTAGAGATGGTGCACAAAgctaggacttttttttttttttttttaaataaactgtctGGAACTGGAATTAACAAAACGATTTCTCTTCGTGTTTGAAATCTGTAAAAGCGCACTATGAACCGCAGGCCgcttttgttttgcacttgaATCAGACTGGAAATGGGTTCGATTGTCACTGGATCAAGTACTGTTTAAACTGGACTCCTCGAGTATAAATCCAATCACTCCGTTTAGTCCGAGACACACTCTCCGACTGCGAGCTGACGTATTTATAGCTTCTGAAAGAAAGGGATAATAATGTACTTCTACTGAGCTGCAATTACGGCCTGAATTATTGAACGGCCGCATATAAATGGAATGAGAGGGATATTAAAGCGATGCAGACAGCTGGATGATTTGTAcagacacacacacacacacacacacacacacacacacacgcacgagCATGCCGGCCATTTTGTTATTACTGTCACTGGTGCGTTAGCTTGAATGTATAAGACCGCACAAACTGTTCTGTCCAAGTAACACCACAGGAACACATTTCATCTTCAAGTGCCTTCTGGGGTTTTCTTTCTGTTAACAGGTTTTtagaacaaaaaataataataaaataaagctacaATGTTTACTCTTGGCAGCGATTTGGTTACCCACGACAGCAgcctttttcatttcttgtaAAAGAGGGCTACCTGGTTCTTCCTGTAAaaattaacttatttatttcataggCTTCATGAAGTGAAATTTGACAAATGggacttttttttgtgtaacta
>XM_026931668.2
atatttttatttatttatttttgtagctGCTCTTTAGTGCGctagtgtgtgatttgtgtgatctgagacacgcGCAGCTCCAGCAAAAGCTCTGAGAGGTGTAGCTGCTTCACTTTCCTAATCTCGGGTGCCACGCCCCGCCCATTCAGCAGCCTCATATCACCGAGGCCCTGAGACGAGAGGAGGCAGAAACCGGGATATCCGCCGTGAGCACGAGCgcgtatacacactcacacacactcacacacacacacacgcacgcacgcacgcagaAGCACGCACACTCGCGCGTGCACTCGGTCCATGCGCCACGCACTCGTCTCGCTCCTCCGCCGCACGTCTGTAAAGAAAGCGTAATTTGTTCTGCGGACGCCGTCCATCGTAGCGGGCCGTTATGGCAGCCACGCTGTTAACGGGACACGAGGACTTTCTGCCGCTGATGAAAGGCTTTCAGGAGGAGTCCGTTCTGTTCACCGACACCGACAGGGGACTGGCCAACGAATACGCGCAGGCAAAGCTAGAGATGGACAAATACCTGACACCTCAGCTGCAGGATTCCCTGGCAGTCAAGAAGCAGTGCCAGGATAGCTCCTCTGTGGAGTTTTTCTGCGATGAACAGGGCTCCCCTTACAGCATCAACATGAATGTGTACCTACCTGACATCGCCTACCTGCGTGGTGGTCTGTGCCGCCCATCCCGGCCCTCTGTCCCCAGCCAGGTGAAAAGCAAGCCAGTGAGCTCGACCTTCTCTTCAGGCCCAGACTGTTCCGTCCCTCCCACTCTTCCTGACTTCACTACCATCTTCAGCTCGCCCTCGGCACCATGCGCGACCATGGATGCAGGTGACGCTTCAAATGGCGTGTTCGTCAAGCAGGAGATGCCCTCTTTTGAGCTTCCCCAGGATGGCCATCTGTTCCAGCTGCTCAGCTCGGACCTTGACGTTCCCATTCAGGCCGTTTCGGACTCTCACGCCCATGCCATGTCGTCAGAGGTGCCCTCCTTCCATGACCTGCACTTAGCAGCCACACAGACTGCCACTAAGCCGTACTGCGCCATGCCCACGCCTGCGTACCCGCTCGCCCCCTCGGGTCACTTCGCCCAGGGCCACACGCAAGTCAAAGCGCCCTACCTTCCTCCCTCGCCGCCCACCTCCGAGCCGGGCAGCCCAGACCGGCAGAAAGAGCTGCTGCACAACCTGACGCCACCGCCGTCTTACGCCGCCAGCATTGCGTCCAAAATGGCTGGCCATATGCCCGCTCATCAAGCACCCACATCCACACGAGCGCCCGCGACCACCAGCGCCGGGGTCATGCCTGTCCGATACAACCGCAGGACAAATCCCGACCTCGAGAAGAGGCGGATACACCACTGTGACTTCCCAGgttGCAAGAAGGTTTACACCAAGTCCTCGCATCTGAAAGCTCATCTGAGGACGCACACTGGCGAGAAGCCATACAGGTGCACATGGGAAGGGTGTGACTGGAGATTCGCTCGTTCTGATGAGCTGACGCGCCACTTCCGCAAACACACGGGAGCTAAGCCGTTCCAGTGTGCCGTGTGCAGCCGCAGCTTCTCCCGCTCCGACCACCTCGCCCTGCACATGAAGAGGCACCAGAACTAATCACTAAACACTTCCCACACTTCTTTTACACCTACATGCATTTATATAGGGAATTACtgtattcacacacaacacactgacaatcacgttcattcacacacacacacacacagttaattgTTCATTTGAAGAGACActagaacaacacacacatgtgtactAGGACGAGCCTTCTGTCTGAGGGTGAACGTTTTCCTCTCACGTGTTTGAACAAGCTCTGAGCTCCTGACTTTATTGCTACAACATGGCcaagattacttttttttttttttttaaatcatcttcCACATACACTCTTTATTAGATCTGATCCTGTCACTTTTATACGGTACTTAAACATGCATCGGCTCGGAAGGAATCCGACAGACTGCTTTAGCTTTTTAATGCTAGCGTTTGTACGATTTGAGGACACGGTTGATGgctgtaactttttaaaaagcaaaaaaaaaaaacagctgcgTTCGTTTGTTGGCACTCATTCAATAAAGACTGCTGCTGTCTCTTAAACCTACACTGCCAGTAAAAAGCTTTCATGCTATACTTATGGTGTAGGATTTTCAGTTAAACTTTAAGTGGACTTCTTTTAAGGAAAATGGATGAGTGAATggacaaatgtgtgtttgtctctgacTCTTTCTGAATCTTTTATCTAAAGCAGGGACTCGCAAACTTTTTGCAGTCagagacccctttaactgtaaaagacaaataaaataaatacgtTTTCACAACCATAATCCAacaaatattacacacattattcaaatgtgtacagtaatttTTCAGATATAATTGGAGTTTTGAACTTTCAACCAATTgaattttgtcacattttattaaaatcgtCATTAGATTCATGTCGccattatttataggcatagCAACTTTTTTATGTGGTGATTTCCACAAAAATCAGAGGCCTGACGAAGCTTTTGAGGTTCCCTGGACCAAACTTTGAGATCTAACTTACCAACTTACCCTCCAAGTGCACCTGAGtttaataaagcacttattACGCACCTAATTCAGtcagttcattcattcttaAATCCAGATTTAGATTTTGATGTAACACTTGAgtatttttgcttatttcaatGCAACATCTGGACCCTAACATTCATTCCAGATGTTTAGAAGCTTTTCCCTGGCAGTgtgaatatattcatataaaaaaacattgtttttttttaactttgaaaACTTCTCAAACATCATTTTCCCCTGACATCTTGTTGCATTGCAATGAACAAGTTCTCCCTTCTCATCCGTCGCTAACAAAACAGTTCGTTCATGTTCTGCTTTACCCAGAATTCCATGGGTAGAGATGGTGCACAAAgctaggacttttttttttttttttttaaataaactgtctGGAACTGGAATTAACAAAACGATTTCTCTTCGTGTTTGAAATCTGTAAAAGCGCACTATGAACCGCAGGCCgcttttgttttgcacttgaATCAGACTGGAAATGGGTTCGATTGTCACTGGATCAAGTACTGTTTAAACTGGACTCCTCGAGTATAAATCCAATCACTCCGTTTAGTCCGAGACACACTCTCCGACTGCGAGCTGACGTATTTATAGCTTCTGAAAGAAAG
>XM_034300398.1
GTCTTATTGAACACTGTCTTGCATGAAAGATCAGAGGTGTGTCCTTGTCTCATGTCTGAGACGCATGTCTGTTTCCCGTGCCATGATGCGTCCTTGTTTATTTCACCACTCGGGATTTCCCCGCGTGTGTTTATACGTGTGTTTAtggctgtgtgtttatgtgcgtgtgtttacgtgcgtgtgtgtttatatatgatGATGCGGGTTCACGGTGGAGTCTCGGGGTCTCTTGGCCACTGaaaccaccaccaacaacatcTGATTCCTCCCCGCCGCCTCGCCCTCACACGTTCCTCCAGGCGATCCTGGAGTGAAACTTCCGAGCAACCGTGAAACAGAACAGCTGGACGTCTAAAAGTCCAAAAATAGCCCGTGCACTTGAGGAGCGCAGACCCGACATTCCGGGTGTCACCCCGGCGCAGGCGCAGGCGAACAAGCCGCGGGTTTGATTGGCCATTTCCCGCTGATTGCGCTCTAATGATAATTGGCTGAGGTTTATATGGAAAAGCTGAGTGTGTgaggctgtgagtgtgtgtttgtgtgtgtgtgagtgtgtgtgtgtgagtgagggagtgaagcTGCAGGTTTCCGCGCGTCAGCAAAGTCTGTTTTGGGCCCGCGGCAAAGCTAGAGATGGACAAATACCTGACACCTCAGCTGCAGGATTCCCTGGCAGTCAAGAAGCAGTGCCAGGATAGCTCCTCTGTGGAGTTTTTCTGCGATGAACAGGGCTCCCCTTACAGCATCAACATGAATGTGTACCTACCTGACATCGCCTACCTGCGTGGTGGTCTGTGCCGCCCATCCCGGCCCTCTGTCCCCAGCCAGGTGAAAAGCAAGCCAGTGAGCTCGACCTTCTCTTCAGGCCCAGACTGTTCCGTCCCTCCCACTCTTCCTGACTTCACTACCATCTTCAGCTCGCCCTCGGCACCATGCGCGACCATGGATGCAGGTGACGCTTCAAATGGCGTGTTCGTCAAGCAGGAGATGCCCTCTTTTGAGCTTCCCCAGGATGGCCATCTGTTCCAGCTGCTCAGCTCGGACCTTGACGTTCCCATTCAGGCCGTTTCGGACTCTCACGCCCATGCCATGTCGTCAGAGGTGCCCTCCTTCCATGACCTGCACTTAGCAGCCACACAGACTGCCACTAAGCCGTACTGCGCCATGCCCACGCCTGCGTACCCGCTCGCCCCCTCGGGTCACTTCGCCCAGGGCCACACGCAAGTCAAAGCGCCCTACCTTCCTCCCTCGCCGCCCACCTCCGAGCCGGGCAGCCCAGACCGGCAGAAAGAGCTGCTGCACAACCTGACGCCACCGCCGTCTTACGCCGCCAGCATTGCGTCCAAAATGGCTGGCCATATGCCCGCTCATCAAGCACCCACATCCACACGAGCGCCCGCGACCACCAGCGCCGGGGTCATGCCTGTCCGATACAACCGCAGGACAAATCCCGACCTCGAGAAGAGGCGGATACACCACTGTGACTTCCCAGgttGCAAGAAGGTTTACACCAAGTCCTCGCATCTGAAAGCTCATCTGAGGACGCACACTGGCGAGAAGCCATACAGGTGCACATGGGAAGGGTGTGACTGGAGATTCGCTCGTTCTGATGAGCTGACGCGCCACTTCCGCAAACACACGGGAGCTAAGCCGTTCCAGTGTGCCGTGTGCAGCCGCAGCTTCTCCCGCTCCGACCACCTCGCCCTGCACATGAAGAGGCACCAGAACTAATCACTAAACACTTCCCACACTTCTTTTACACCTACATGCATTTATATAGGGAATTACtgtattcacacacaacacactgacaatcacgttcattcacacacacacacacacagttaattgTTCATTTGAAGAGACActagaacaacacacacatgtgtactAGGACGAGCCTTCTGTCTGAGGGTGAACGTTTTCCTCTCACGTGTTTGAACAAGCTCTGAGCTCCTGACTTTATTGCTACAACATGGCcaagattacttttttttttttttttaaatcatcttcCACATACACTCTTTATTAGATCTGATCCTGTCACTTTTATACGGTACTTAAACATGCATCGGCTCGGAAGGAATCCGACAGACTGCTTTAGCTTTTTAATGCTAGCGTTTGTACGATTTGAGGACACGGTTGATGgctgtaactttttaaaaagcaaaaaaaaaaaacagctgcgTTCGTTTGTTGGCACTCATTCAATAAAGACTGCTGCTGTCTCTTAAACCTACACTGCCAGTAAAAAGCTTTCATGCTATACTTATGGTGTAGGATTTTCAGTTAAACTTTAAGTGGACTTCTTTTAAGGAAAATGGATGAGTGAATggacaaatgtgtgtttgtctctgacTCTTTCTGAATCTTTTATCTAAAGCAGGGACTCGCAAACTTTTTGCAGTCagagacccctttaactgtaaaagacaaataaaataaatacgtTTTCACAACCATAATCCAacaaatattacacacattattcaaatgtgtacagtaatttTTCAGATATAATTGGAGTTTTGAACTTTCAACCAATTgaattttgtcacattttattaaaatcgtCATTAGATTCATGTCGccattatttataggcatagCAACTTTTTTATGTGGTGATTTCCACAAAAATCAGAGGCCTGACGAAGCTTTTGAGGTTCCCTGGACCAAACTTTGAGATCTAACTTACCAACTTACCCTCCAAGTGCACCTGAGtttaataaagcacttattACGCACCTAATTCAGtcagttcattcattcttaAATCCAGATTTAGATTTTGATGTAACACTTGAgtatttttgcttatttcaatGCAACATCTGGACCCTAACATTCATTCCAGATGTTTAGAAGCTTTTCCCTGGCAGTgtgaatatattcatataaaaaaacattgtttttttttaactttgaaaACTTCTCAAACATCATTTTCCCCTGACATCTTGTTGCATTGCAATGAACAAGTTCTCCCTTCTCATCCGTCGCTAACAAAACAGTTCGTTCATGTTCTGCTTTACCCAGAATTCCATGGGTAGAGATGGTGCACAAAgctaggacttttttttttttttttttaaataaactgtctGGAACTGGAATTAACAAAACGATTTCTCTTCGTGTTTGAAATCTGTAAAAGCGCACTATGAACCGCAGGCCgcttttgttttgcacttgaATCAGACTGGAAATGGGTTCGATTGTCACTGGATCAAGTACTGTTTAAACTGGACTCCTCGAGTATAAATCCAATCACTCCGTTTAGTCCGAGACACACTCTCCGACTGCGAGCTGACGTATTTATAGCTTCTGAAAGAAAG

Function

NR:

description
Krueppel-like factor 5

GO: NA

KEGG:

id description
K09206 KLF5; krueppel-like factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU445042 False 1737 lncRNA 0.37 2 13972336 13974094
XM_026931668.2 False 3231 mRNA 0.48 4 13972851 13980251
XM_034300398.1 True 3341 mRNA 0.47 4 13972851 13979669

Neighbor

gene id symbol gene type direction distance location
lmo7b LOC108259086,LOC108437774 coding downstream 70089 13867688 ~ 13902247 (-)
cldng LOC108258891 coding downstream 494078 13476472 ~ 13478258 (-)
creb1a creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602 coding downstream 545182 13417325 ~ 13427154 (-)
trnar-ucu_18 NA coding downstream 644193 13328052 ~ 13328143 (-)
trnar-ucu_17 NA coding downstream 646252 13325993 ~ 13326084 (-)
tpt1 tpt1,LOC107598740,LOC107691594 coding upstream 56179 14036430 ~ 14042668 (-)
LOC113537775 NA coding upstream 57480 14037731 ~ 14037862 (-)
LOC113537774 NA coding upstream 58277 14038528 ~ 14038598 (-)
LOC113537776 NA coding upstream 58603 14038854 ~ 14038986 (-)
LOC113537289 NA coding upstream 87924 14068175 ~ 14073205 (-)
LOC117596131 NA non-coding downstream 111562 13853076 ~ 13860774 (-)
G375615 NA non-coding downstream 135803 13836098 ~ 13836533 (-)
G375614 LOC108259021,LOC107655163,LOC107580539 non-coding downstream 137356 13832468 ~ 13834980 (-)
LOC117596119 NA non-coding downstream 141765 13829181 ~ 13830571 (-)
G375466 NA non-coding downstream 451413 13520563 ~ 13520923 (-)
G375864 NA non-coding upstream 98713 14078964 ~ 14085441 (-)
G375871 NA non-coding upstream 141247 14121498 ~ 14125258 (-)
G376038 NA non-coding upstream 341933 14322184 ~ 14340390 (-)
G376048 NA non-coding upstream 402957 14383208 ~ 14455469 (-)
G376050 snrpb2 non-coding upstream 406087 14386338 ~ 14387875 (-)
G375428 NA other downstream 532801 13439219 ~ 13439535 (-)
gyg2 gyg2 other downstream 651806 13307713 ~ 13320530 (-)
LOC113537246 NA other downstream 1341933 12625051 ~ 12630403 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1888287 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 3099780 10871224 ~ 10872556 (-)
pibf1 pibf1 other upstream 2494 13982745 ~ 14016151 (-)
G375826 NA other upstream 47043 14027294 ~ 14030879 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other upstream 125955 14106206 ~ 14180614 (-)
dand5 LOC108258523 other upstream 294076 14274327 ~ 14276537 (-)
meis1a meis1 other upstream 480032 14460283 ~ 14524516 (-)

Expression


Co-expression Network