G376602


Basic Information

Item Value
gene id G376602
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15099016 ~ 15101012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU445990
AAAATAACACTGCAACTCAAAAAGGCATCATGCGTAAACAAATCTCCAATGCATCATGGGTAATCCATCTGTTGGATTTGTTTTTAGGTCAGTGCCTTCTGGAAACATGATctctttcaaaaaaaacaaacaaaaaaaaagaacaaatggtACTAGCATGTTAGCATCCACATAAAACAATCATGACTTGAGAAAACAATGATTGTAGGCAACTTCTTTCACAATTCTACATTCCACCAACCTGTGGTCAAATATCTCGATCGTCACAAAGATCACTTAATGTAGAAGCACATGCTAGCATCTCTAATAATGCATTAAAGCTAGCAGGAGCAGGTCAGAATCATAGCACAGATTAATGCTAATCATGACGAGCTAATTATGGAAAATAGGGACAAATCTGCAGCTTGCATGGAGGAAATTAAGGTTATGCAAAGTGATGCGAAACAAGATGACTGACTGAGCGCTAAAGTCAGAAAGAGCATTACGTCCAAAAATAAagttttctctcattttttcaaCCTCCAGAACTCTCAGACATGTCGTCATTTAAAACATAAGCAGACATTCTCTCTGTCGATGTAGAAacacactgccagtcaaaaggtTTCTGGATATCCTatattttagtaaatataaaattgagAAACATTTTCCAGATCCATTATACGTCAAGACAAGTCATGTATATGATAATGTATGTACTAACTGTAGCGctagaaaacatttttcaagATTAGAAACTTCACCTTTAATAAAAACCTTGAGAGATTTGAAAGTGCctctgtaaggaataaaacacaacagggcatgctgttgtaggaaaataatccacaatcgGATGGTGTGATACATCCTGatgcaaacaggaagtgttttcAGCCACTAGCAAATGACCCCAATTTTCACTCtataaaagaatgacacattgtgcttattatccatttatagttacatttcatgttaaagacaagttatttcctgttctcgcttgcgttatagcagctatacagtCTTTCCCTCGCaattcgtcttgttaccaagaaaccataaagtgcaaagccctgaagactttcccgtgtcagaaaacttacttttttttacaaaacactgacactggagactcctttcttaaaggttaaataaacatctccttacagaaaacgtcaccatattaACGATTCTATGTTAAATAGCacattttttgaatccattcaTTTCTAGGCTTAGATTACATGAAGCGTCCTCCAGACAAGTctctgtgagtgagctgttactatagaaacgatgagcgcattaatataaacctgtgatccaGTCAGAATCGAGAGCTCGACAGCACTGGGGTGTCATTAATCATAATCTGTAAGTTTGTCTGTATTGAGTTGTCATGGTGTAGGTTTTCGGATTGTGACAGTGATGAAACTGTAATAAAAGCGCAAACTCCATGATTTTCTAAAAACGTTTAAACTGGCAGTGTGTATGCATATGCATGTAAATACTCTCACACGAACGGGATGTAATGTATAAGTATATAAGGCATATCACTCAAATTAATTTAAGGCATTAAACATTGATACACTATGGCAGATAGAACAGTTCTCTCAAAAGGCAATAATGAATAAGGCAAACGACTGCATGGCACTAAGAGAGAGGATAGAACACAAAGCTAaatctgtatatatgtgtgtgtgtgtgtgtgtgtatcagtgatgTGTAATGATCATATGTAATAACTCTCTGACCAGGTTTATGTGAGTGTATGAGCTGTAAGTGGTgttgaatagtgtgtgtgtgtgtgtgttagttgtgCGTGCTGTTGAACAGATCCGTCCTGGCTAATTTGGCGGGCGGTTCCAGAGACTCCTCCCCCATAGCAGTCGAGCTGACCGGAATAGGCATCTGGTCTTCGTCGCTCtcgtcctcttcctcttcc

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU445990 True 1933 lncRNA 0.38 3 15099016 15101012

Neighbor

gene id symbol gene type direction distance location
rln3b rln3 coding downstream 21400 15074671 ~ 15077616 (-)
spast spast coding downstream 26671 15060921 ~ 15072345 (-)
LOC113537617 NA coding downstream 140815 14953561 ~ 14958201 (-)
cct4 cct4,LOC107700877,LOC107594293 coding downstream 200874 14890222 ~ 14898142 (-)
fam161a fam161a coding downstream 210107 14880246 ~ 14888909 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding upstream 3165 15104177 ~ 15113293 (-)
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding upstream 35221 15136233 ~ 15142801 (-)
ccsapa LOC108258518 coding upstream 71726 15172738 ~ 15180828 (-)
acta1a acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882 coding upstream 80621 15181633 ~ 15186072 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding upstream 90293 15191305 ~ 15208140 (-)
G376574 NA non-coding downstream 53657 15044712 ~ 15045359 (-)
G376364 NA non-coding downstream 63550 15035165 ~ 15035466 (-)
G376171 NA non-coding downstream 359209 14739369 ~ 14739807 (-)
G376127 taf5l non-coding downstream 437705 14657946 ~ 14661311 (-)
G376093 NA non-coding downstream 566332 14532367 ~ 14532684 (-)
G376608 LOC108259073 non-coding upstream 31005 15132017 ~ 15132290 (-)
G376613 NA non-coding upstream 46773 15147785 ~ 15147985 (-)
G376615 NA non-coding upstream 51880 15152892 ~ 15153120 (-)
LOC117596121 NA non-coding upstream 57134 15158146 ~ 15158646 (-)
G376671 jag1 non-coding upstream 296656 15397668 ~ 15401270 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 137964 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 349282 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 386370 14697239 ~ 14712646 (-)
G376143 NA other downstream 414688 14682387 ~ 14684328 (-)
meis1a meis1 other downstream 574500 14460283 ~ 14524516 (-)
triobpa LOC108259073 other upstream 16500 15117512 ~ 15129256 (-)
dpy30 dpy30,LOC107684266 other upstream 311412 15412424 ~ 15458205 (-)
G376956 NA other upstream 816616 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 828741 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 862864 15963876 ~ 15984959 (-)

Expression


Co-expression Network