G376608 (LOC108259073)


Basic Information

Item Value
gene id G376608
gene name LOC108259073
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15132017 ~ 15132290 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU446002
CTCCCATCGCAGAGGCTCAACCTCCCATCTTTCTGTGACCTCTCACACTTCATCCAAAAGAGCTTCTCGAAAATGCAGTCCAGCAACAAGACGAGCCTCTGTGGTCTCACAGACGCACTCTCCCTCTCGAATATCTTCGTCTAACAGATATACAGATTCATTGACCCACTCCCAAAAGCGAATTCCTTCCCAGAGTTCCTATGACCAACACAGTCTGGACTCGGAAAAGCTGTATCGTAATCTACAATCAATTGCTAGTTCAGCAGAGTCAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446002 True 274 lncRNA 0.47 1 15132017 15132290

Neighbor

gene id symbol gene type direction distance location
dcaf15 dcaf15,LOC106592097,LOC106594349 coding downstream 18724 15104177 ~ 15113293 (-)
rln3b rln3 coding downstream 54401 15074671 ~ 15077616 (-)
spast spast coding downstream 59672 15060921 ~ 15072345 (-)
LOC113537617 NA coding downstream 173816 14953561 ~ 14958201 (-)
cct4 cct4,LOC107700877,LOC107594293 coding downstream 233875 14890222 ~ 14898142 (-)
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding upstream 3943 15136233 ~ 15142801 (-)
ccsapa LOC108258518 coding upstream 40448 15172738 ~ 15180828 (-)
acta1a acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882 coding upstream 49343 15181633 ~ 15186072 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding upstream 59015 15191305 ~ 15208140 (-)
ndufaf5 ndufaf5,LOC107684300,LOC107583196,LOC107594415 coding upstream 104570 15236860 ~ 15243012 (-)
G376602 NA non-coding downstream 31005 15099016 ~ 15101012 (-)
G376574 NA non-coding downstream 86658 15044712 ~ 15045359 (-)
G376364 NA non-coding downstream 96551 15035165 ~ 15035466 (-)
G376171 NA non-coding downstream 392210 14739369 ~ 14739807 (-)
G376127 taf5l non-coding downstream 470706 14657946 ~ 14661311 (-)
G376613 NA non-coding upstream 15495 15147785 ~ 15147985 (-)
G376615 NA non-coding upstream 20602 15152892 ~ 15153120 (-)
LOC117596121 NA non-coding upstream 25856 15158146 ~ 15158646 (-)
G376671 jag1 non-coding upstream 265378 15397668 ~ 15401270 (-)
G376670 LOC107729604,LOC103360699,LOC104950577,LOC105910653 non-coding upstream 328844 15461134 ~ 15462622 (-)
triobpa LOC108259073 other downstream 2761 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 170965 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 382283 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 419371 14697239 ~ 14712646 (-)
G376143 NA other downstream 447689 14682387 ~ 14684328 (-)
dpy30 dpy30,LOC107684266 other upstream 280134 15412424 ~ 15458205 (-)
G376956 NA other upstream 785338 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 797463 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 831586 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 1020629 16152919 ~ 16164370 (-)

Expression


Co-expression Network