dpy30 (dpy30,LOC107684266)


Basic Information

Item Value
gene id dpy30
gene name dpy30,LOC107684266
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15412424 ~ 15458205 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU446065
TAGAAGGTGACCTTAGTGTCGCGTCAAATCTCGCGAGAGGTCCGAGTTGCGGTTGAAATGAACGCCTCGCTCCGAGTCCTTTCGCAAATCTCGCGAGATTACATTGTAGCCGTAAACCCGAGGGCCAGCGCTACGCAAGGTACGTAAATTCTCGCGTTGATTCGGCGCGTAGGAAATGTTTGCGTAGAAACTAACAACAAACATGGCAGACGATCACACAGATGCGGATCAGAGCATGGAAGGACACACTCCTGTCGCAGAAAATCCCCACGCAGAGTACGGCCTCACGGAAAACATCCAGagaataGTGGAGAGCGAGAAGGCCAACGCTGACAAAGTGCCCAAACAGAAGGTGGATCTCCAGACGCTACAGACTCTCCCGACGCGAGCGTATCTGGATCAGACGGTGGTGCCCATTCTGCTCCAGggcctctccct
>TU446066
CTTTAAATAACAAACGGattttattcagtaaataaatatgtattgaTATCGTATTTAAGGCTCATGTAGcgatttagattttttatcatttctaatcATAAACCCGTGGTTTTCAGGTCACTACGCCTGAACTAGGATTAGTCGAATTAGTTTAGCGAGATAACGTTAGCTCGGGTTGCGTCTCGCGAGCATCAACAGCTAGCTATTTATTCCGCTCATTAATCACAGCAACAAGTATTTATCCTTTATAATCTGCATAAATGCGCGTTTTTAGGAAGGCTCGGCTTGTGGTAACGACCTAATTGTATTTACATCGCCATACAGTTCatttaaatgtatgcaaatcACGACATTTCCCGGCTTTGAATCTGGCAAGGCCGGAAAAAAAAGGGacgcattattatttttttccccatccgtATTCCGATAAATCCGCATCCTCTGCGCGGATTGGCTAGCGCTTCATGACTGGCGTTCATTTCGTCCAATCGTCTTGCTGCGTTCCTCTGGACGGAGGCGGGGTTTCTGGGAAAACGGGTgcgaaataaaacacaacgccGAAGGGGGCCCAATTTGCGCTGTTTAGCTATTTGCTAACCTTGTTAGCTGGATATGAGACCTACGTAGGGGGAATGTGTCAAAAAACCAGCCAATATGCGACGCCAAGTTAGTGACAtaactataaaacatataaacgACAAAAGACACAGAAGAAACATTGCATTCGTTGATTGCCTTCAAATCCATCTTGAAGAAGAGAGCTAGCTAGCCGCGGCTAAATcggctaagttagctagctaacatgttGAAAGTGCCGCCAAAGGCGCTTTTACCTGATGTCGCGGATTTGTCAACACGCtgattcctctttttttcttctttcgtGCGTTTGTGTGTTGCTTTTATCAGATTACAGTTTGGTTTAATAACTCTGAAATGTGTTTAATCTCCCGTCCTAAATATCTGTTAATCTCGTGAGATTGTTAGTTATTCAATCGCCAgcgcctctttttttttactactgcgatttttttttttaatggtgtaTGGTGCATAGGCACCTACCGTGTCCACTTTCGGCTTCCGTACGTGACGCTGTTTTCCGTGTCGCCCAATCAGCGATGGACGTCCTGCTAACGCGGAAGGGAAAAAAGTTGGCAAGGGTTGTCGGCCATGTCTAGAAGGTGACCTTAGTGTCGCGTCAAATCTCGCGAGAGGTCCGAGTTGCGGTTGAAATGAACGCCTCGCTCCGAGTCCTTTCGCAAATCTCGCGAGATTACATTGTAGCCGTAAACCCGAGGGCCAGCGCTACGCAAGGTACGTAAATTCTCGCGTTGATTCGGCGCGTAGGAAATGTTTGCGTAGAAACTAACAACAAACATGGCAGACGATCACACAGATGCGGATCAGAGCATGGAAGGACACACTCCTGTCGCAGAAAATCCCCACGCAGAGTACGGCCTCACGGAAAACATCCAGagaataGTGGAGAGCGAGAAGGCCAACGCTGACAAAGTGCCCAAACAGAAGGTGGATCTCCAGACGCTACAGACTCTCCCGACGCGAGCGTATCTGGATCAGACGGTGGTGCCCATTCTGCTCCAGggcctctccct
>TU446067
TGGACGTCCTGCTAACGCGGAAGGGAAAAAAGTTGGCAAGGGTTGTCGGCCATGTCTAGAAGGTGACCTTAGTGTCGCGTCAAATCTCGCGAGAGGTCCGAGTTGCGGTTGAAATGAACGCCTCGCTCCGAGTCCTTTCGCAAATCTCGCGAGATTACATTGTAGCCGTAAACCCGAGGGCCAGCGCTACGCAAGGTACGTAAATTCTCGCGTTGATTCGGCGCGTAGGAAATGTTTGCGTAGAAACTAACAACAAACATGGCAGACGATCACACAGATGCGGATCAGAGCATGGAAGGACACACTCCTGTCGCAGAAAATCCCCACGCAGAGTACGGCCTCACGGAAAACATCCAGagaataGTGGAGAGCGAGAAGGCCAACGCTGACAAAGTGCCCAAACAGAAGGTGGATCTCCAGACGCTACAGACTCTCCCGACGCGAGCGTATCTGGATCAGACGGTGGTGCCCATTCTGCTCCAGggcctctccct
>TU446084
ttttctttccgaAGGCCTCCAAATCCGATCGAGTTTTTAGCGACATTCCTCCTGAAGAACAAGTCTCAGTTTGAGGACCGGAGTTAAGCTGAAGGATCGATGAAGCCTCTGATCGAAACACAACCTTGTCACTTGTTCAAATGTTTGCCgactgttagtttttttttttgtttgtttgttagtttttttttttaacacttgattaaaaatgttacagCAGAAACACGACACCAGGCTTCATTTGTcagtttaataatttattgtcCAGTTTGTTGGGTCGTTTACACTTTACTCTCACACAACATCAGTTCCACACGACACACAAAAGCCAGTGAGGAAACCTCAGGTTATATGTAAACATACAAAAATCAAAGTTTTACACAGGAATCTAGAAAATACGTGTATGTGTTCCTCTTCGGTATATAAAGATGCTCAGCGTAGACAAAACCACGAGTCTCCAAGCGCCGCCTTCATCGTCCAGTCACGTTTATCATGCGTACTCGTTTCTCCTTCTTATAtctaaaacacttcatgacttACTTCAGGCAGTAAGAAACcgcagaaaagaagaaaagcttcacatttaacagaaataaacagagataaagaacattaaaaaaaaaaaaaacaatgaagaaCAAGACAAGTttatttctgattggtcaaaactTCAACAGATTGCGTTTACACTTTGACGTAGTTTATATCAGTGTTTCTCAAACGTTTTGTAGCCAGAcgcccctttaactgtaaaataaattctacagCCCGCCTCGTTATGGATTTATCTCATGAATGTTATCGAGATATTTCTATGGAGCCACAGAACCTTCTCCTCCTTTAGGACTCGTTAGGTCGGAGctgactttggtgcttggacccctaaatataataacttcgATAACgtgggttgtgattttcaccgctgtaacaaaatcaaaatattcATTAGCCTCTGGACGCCACTTCaagatttataccacagtgctgctcagttctcaattctgattggtcagcaggtttatattaatgcgcttgttcCacattaaatggattaaaaaatgtgttgttgatACGAATGACGTTTTccgtaaagagatgtttatttaacatttctggaaggagtctccagtgtcagcacgtCGGAAccgtcagagataaagctgtaactaagttttctgacatcgtGAGGACAGAGGAATTGTCTGGGTCACATGACACGCTGTGGTTTTTGTCTGGTGggcgagggaacgactgtttgtagctgctataacgaaAGTAAgaatttgtttcatggacgttccacaacactcagtgtaactataaatggagaaaaagcaACAGGtgtcattttattaatataagattgtaatcgttggcaaattgctgtggtataagagaaatgaaCCACCTGGGGACGAGCTGTTATTGGAGTGgtaactgcttcatcacaccatcatcttcatcatagttgattattttcctataacagcatgactcaAAGTGTACAGGATAAGCAATAAATCCAGTTCCTCTTGTGTGGGATTTGTAGTAATGTGGATTAAAGGTAAATTTCCCATGGGATTAAGATTTTTCAGATCTCAACGGCTGAGAGATTGTAAGCGTCAGTTTCGACCTGTGAGCAGCGAGTTGTTTCTCACATAAATCGagttataaagaaataaagtgtaAGATATATTGGGTGACATAAAGCTCGAGCTCGTATTTCTTCCCACTGGGTTGGTATTGTTGCGAACCTAGCGCTTGAGAGATTACTCGTTTAATTCAGAGTACGGTCACGTTGTAGTAACTGGTTAATGAGAACGATAAATCGGGGATTTATTCGTGGACAcctattgatttaaaaaaaaaaaaaaacaattcaagaTCATAAGATTAGCCGTTAGACATAAATGCACTGTAAATAGCTAAAATGagcaaagtgaaaaaaacacGCACAAGAACACAGCTCTTTGTGAATTAACTATAAAACACTTCGGTTTCTCACGTAACCtcgtaaaataaaatgtagtcgATTAGCCGAGACACGTCCGGTGCCTGATGTTCACTACGTTTACTTCTGAGgtacgaggctaatgtagctaaggAGTAATGGAAGTTTGTGAATGGAAGAGTGTGAATCGTCGCAGTTACGTCGCCTCAGTCGGCTTTGTAGCGCTGTTCAGTGTCTCAAACAGACGTCTTCGTGATCATTCTGACTCTGTGTAATCGTATTCAGCCACAATTCATTcgatttgtagaggttttggAATTAGTATTGAATTTTCACGATTTCTGAATCGATATTCAATGCGTTAAAGCTTAGCCAGGcttaataataattctatttaGGTTACAGGTTCATTGTTTTAATAGTAGAttgtagttattattataaagataACGATACTCCTACGGAGCCAAAAGCACTTAACGTGAAGACCGTGTTGTTTTTCGATTACTGTTTTGTCCAGTGCTAATCAGTTGATAAATGACTGCATGATGCTAAACGTGTAGCTATACTCTTCCCTTCTTTCTTGCCTACATTATCCTTGTAGCTCCATTACAAATGACGTTTGTGGTAAAGTGGacattgtgtacatttgatttttcctttaattcttTCAGAATCTGGCACTAACACTGctaacaccattttttttttatctaacaAAAATACCACAAGCTTAAGAACCCGGtggcttggttttttttttttggtggaggTTTATCTGACCAAGACTTTAATTCTTCATTActagtgttctgtgtttctaGTCATGTTTTGATTTGTATCTATTGGTTCCTCTTCTTTTATGGCATTTTCTCAACATCTGGATCAATACAGATGCTAACATTTGCTAATAAAGCAGTGTTCGACTttgaatctgaaaaaaaaaaaaaaaaatatataaaaaacctTCGAAGAGCATCTGGGAAGCCCAGAAAGAAAGCTCTGAGCTGAACCACCTTCGCCCCGAACATCATCTGATCTAGGGTCAGTTGTTGCTTCTCATACCCAGTTATTAATCTGAATACGAATGGCGAGATCTGATCCCAGATCAGGACTTATTCTAAAAATCATCGCAGGGCTGCAGACGTTACGTGGGCCGCGTCTCCGTGAGCGACGAGCGACGGCGATCACCAGCACGTCCTGCCTCCAGCGTTCTCACGTACGAGGGTAAATAAAAGACTTTGTAGTTATTCTCACATTGGCGGGCGCTGGTTGTGTCGTTATGGCTTGGCGGCGGCGGCGACGGTGGCGAGTCTCCGGGATCAGATGTAGTACTGATGAGCTGCCAGGCTGTCCATGAACGGCTGCACCAGGTTGTCAGTGGAGAAGTAGAAGATGAGGCCGAACGCGATGGAGATGGGCAGAGCCGGGAGAGCTTTCTTAAAGATGGCCAGCAGCAGGAGAGTCAG
>TU446085
ttttctttccgaAGGCCTCCAAATCCGATCGAGTTTTTAGCGACATTCCTCCTGAAGAACAAGTCTCAGTTTGAGGACCGGAGTTAAGCTGAAGGATCGATGAAGCCTCTGATCGAAACACAACCTTGTCACTTGTTCAAATGTTTGCCgactgttagtttttttttttgtttgtttgttagtttttttttttaacacttgattaaaaatgttacagCAGAAACACGACACCAGGCTTCATTTGTcagtttaataatttattgtcCAGTTTGTTGGGTCGTTTACACTTTACTCTCACACAACATCAGTTCCACACGACACACAAAAGCCAGTGAGGAAACCTCAGGTTATATGTAAACATACAAAAATCAAAGTTTTACACAGGAATCTAGAAAATACGTGTATGTGTTCCTCTTCGGTATATAAAGATGCTCAGCGTAGACAAAACCACGAGTCTCCAAGCGCCGCCTTCATCGTCCAGTCACGTTTATCATGCGTACTCGTTTCTCCTTCTTATAtctaaaacacttcatgacttACTTCAGGCAGTAAGAAACcgcagaaaagaagaaaagcttcacatttaacagaaataaacagagataaagaacattaaaaaaaaaaaaaacaatgaagaaCAAGACAAGTttatttctgattggtcaaaactTCAACAGATTGCGTTTACACTTTGACGTAGTTTATATCAGTGTTTCTCAAACGTTTTGTAGCCAGAcgcccctttaactgtaaaataaattctacagCCCGCCTCGTTATGGATTTATCTCATGAATGTTATCGAGATATTTCTATGGAGCCACAGAACCTTCTCCTCCTTTAGGACTCGTTAGGTCGGAGctgactttggtgcttggacccctaaatataataacttcgATAACgtgggttgtgattttcaccgctgtaacaaaatcaaaatattcATTAGCCTCTGGACGCCACTTCaagatttataccacagtgctgctcagttctcaattctgattggtcagcaggtttatattaatgcgcttgttcCacattaaatggattaaaaaatgtgttgttgatACGAATGACGTTTTccgtaaagagatgtttatttaacatttctggaaggagtctccagtgtcagcacgtCGGAAccgtcagagataaagctgtaactaagttttctgacatcgtGAGGACAGAGGAATTGTCTGGGTCACATGACACGCTGTGGTTTTTTTTTTGTCTGGT
>XM_034300210.1
ATGTTTCCAGATCACACAGATGCGGATCAGAGCATGGAAGGACACACTCCTGTCGCAGAAAATCCCCACGCAGAGTACGGCCTCACGGAAAACATCCAGagaataGTGGAGAGCGAGAAGGCCAACGCTGACAAAGTGCCCAAACAGAAGGTGGATCTCCAGACGCTACAGACTCTCCCGACGCGAGCGTATCTGGATCAGACGGTGGTGCCCATTCTGCTCCAGggcctctccctctctctcgctcaacgaAGGCCTCCAAATCCGATCGAGTTTTTAGCGACATTCCTCCTGAAGAACAAGTCTCAGTTTGAGGACCGGAGTTAAGCTGAAGGATCGATGAAGCCTCTGATCGAAACACAACCTTGTCACTTGTTCAAATGTTTGCCgactgttagtttttttttttgtttgtttgttagtttttttttttaacacttgattaaaaatgttacagCAGAAACACGACACCAGGCTTCATTTGTcagtttaataatttattgtcCAGTTTGTTGGGTCGTTTACACTTTACTCTCACACAACATCAGTTCCACACGACACACAAAAGCCAGTGAGGAAACCTCAGGTTATATGTAAACATACAAAAATCAAAGTTTTACACAGGAATCTAGAAAATACGTGTATGTGTTCCTCTTCGGTATATAAAGATGCTCAGCGTAGACAAAACCACGAGTCTCCAAGCGCCGCCTTCATCGTCCAGTCACGTTTATCATGCGTACTCGTTTCTCCTTCTTATAtctaaaacacttcatgacttACTTCAGGCAGTAAGAAACcgcagaaaagaagaaaagcttcacatttaacagaaataaacagagataaagaacattaaaaaaaaaaaaaacaatgaagaaCAAGACAAGTttatttc

Function

symbol description
dpy30 Acts upstream of or within embryonic hemopoiesis. Predicted to be part of Set1C/COMPASS complex. Orthologous to human DPY30 (dpy-30 histone methyltransferase complex regulatory subunit).

NR:

description
PREDICTED: protein dpy-30 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446065 False 438 TUCP 0.54 4 15455779 15457027
TU446066 False 1616 TUCP 0.46 4 15455779 15458205
TU446067 False 494 TUCP 0.54 4 15455779 15457083
TU446084 True 3423 lncRNA 0.40 2 15450312 15453792
TU446085 False 1245 lncRNA 0.38 3 15412424 15453792
XM_034300210.1 False 895 mRNA 0.42 4 15453138 15456387

Neighbor

gene id symbol gene type direction distance location
btbd3a btbd3,btbd3a,LOC107747408,LOC107594463,LOC107675618,LOC107583195,LOC103354797 coding downstream 121062 15286110 ~ 15291362 (-)
LOC113537242 NA coding downstream 139590 15262046 ~ 15272834 (-)
LOC113537336 NA coding downstream 154130 15250611 ~ 15258294 (-)
ndufaf5 ndufaf5,LOC107684300,LOC107583196,LOC107594415 coding downstream 169412 15236860 ~ 15243012 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding downstream 204284 15191305 ~ 15208140 (-)
LOC113537512 slc9a3r2 coding upstream 24329 15482534 ~ 15494984 (-)
nthl1 NA coding upstream 39734 15497939 ~ 15501527 (-)
pkd1a pkd1 coding upstream 92721 15550926 ~ 15634447 (-)
tekt4 tekt4 coding upstream 261433 15719638 ~ 15727747 (-)
LOC113537443 NA coding upstream 328044 15786249 ~ 15789136 (-)
G376671 jag1 non-coding downstream 11154 15397668 ~ 15401270 (-)
LOC117596121 NA non-coding downstream 253778 15158146 ~ 15158646 (-)
G376615 NA non-coding downstream 259304 15152892 ~ 15153120 (-)
G376613 NA non-coding downstream 264439 15147785 ~ 15147985 (-)
G376608 LOC108259073 non-coding downstream 280134 15132017 ~ 15132290 (-)
G376670 LOC107729604,LOC103360699,LOC104950577,LOC105910653 non-coding upstream 2929 15461134 ~ 15462622 (-)
G376755 NA non-coding upstream 90187 15548392 ~ 15549785 (-)
G376758 NA non-coding upstream 153417 15611622 ~ 15653021 (-)
G376763 NA non-coding upstream 216602 15674807 ~ 15679171 (-)
G376786 NA non-coding upstream 222956 15681161 ~ 15683090 (-)
triobpa LOC108259073 other downstream 283168 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 451372 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 662690 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 699778 14697239 ~ 14712646 (-)
G376143 NA other downstream 728096 14682387 ~ 14684328 (-)
G376956 NA other upstream 459423 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 471548 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 505671 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 694714 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 758545 16216750 ~ 16221615 (-)

Expression


Co-expression Network