G376671 (jag1)


Basic Information

Item Value
gene id G376671
gene name jag1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15397668 ~ 15401270 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU446071
aagaatttaataaatattactttcaaatgacacaaaaaagacaAGACTCCTTgcaaaaaaataggaaaagttCTCAAGTTTAACACTCATGTAAAACCGAAACTTGTCTCGTTTTTTGTTCAGAGAGGCCTAAAGAAAGTGTACGATGTCAATGCTGGCCAGCATCACTCAGAGGAAAGAGTTCACTTTGACGGACCTGCCCTTTTTTCTGTCCtaaaattattaagaaaataacGACACTTTACAAAAACACGACGATTGGACAAATCATATAGAGTTTTGACTTTTCCAGGAAAGTGAAGCTCTTTGAATTTTACGCTCTTCTTCTCGTTTCCTCAGTCGTTTGGGATAAACAAACTGCTGGCTATGAGCTTTAATTTCACCTCACTACAGAAATACTGCTACGGGAAGTGTTGGTTACATTAACACGGTGACAGAACATTCTAGGTTGATTTATGACAGAATATAGAAATACACCACTGCAGAAATGTCTATTCACTTATGTTTGTCTTTGTTGTAAGACGCGTTAAGTCacgtttctttcttttccatcttTCTCCATCGCCACTTCAGAACGTTCCAGAAATAATCCTGACCAAACCGTCGAACTataaatgtgtttcttttttttttttttttttcttaaacaaaacTTTGTACAGCGCATCTCATTTCATACAgttagaataaaaaataaaactattcttTCAAGAAcacttttggcatattttttttttttttacaaaatgtttttttgtgtgaaacaaATGTTTTCTGTCAAAAATAAGGAAGTAGAAAGCTTACAAAGCTGTCGAACCTTCGAATCTAAATGaagcacataaataaaaaaaaaaaaaaaggaatgataGGCTCTCGAATATTAagttaataaatcaaatatacacaatgattaattaaaaaatatgtacatacaaaaaaaaaatctacacaacaTTGATGTCATAGTAAAGTCGACAAATTAAATTCTTCATATTGCAAGGGACTGAAGTTTGACCTGCCgcctgcaaaacaaaacaataaaaatgacaataaataataataataatagtaatcgtaataataataatgaagttttggttgttgtggttgttgtggtgTGGTGTAGCAGGAAACTTCGGGCTAACAGAATGTTTAATGCGGGTTTCATTCAGGGGTGGGCGATGTGATATGATGATAAGATACAATGATCACAATACACTTAGAGTATCGTCAGTGTTTTTATATACCGTGAAATGAGCAGCTGACTGGaagttcatctgtttttttatttcctcgGTTTGTTTAATTTGCCTTGTCATTCCTTGAAATGAAATTTTGTCAgacattttgtgaaactgtCTTCAAGTATCAcaatgttagattttttttttttttttttggataattgGCCCACCCCTAGCGTCAGATCCAGGATTTTAATTCGTAATCTAAACATTAAAAGAACAACCCGGCGTTTTTCAACCTCATTTCTATTCACTGTATCTGTAGAGAAGAATTTCAACGCGTTTCCCTGCAATGAGAAGACAACAGAAATCCAGTTTCCTCCAAACTCACTTCTAATGcaagtctaagggcagctgttAAACTCAAGAAACAATGTGAGCCATTACACATAAGACGACACAAGAAAAGACAAATTACACAGATTTAAAGCTCAGATTACAAACACCTTCGATTGAAGAAATCATGAAAGCgttttacaaaaatacatatttcatgtaaatgtttacagatggaaattcaacaactgcccttagacttccattataagtgagccTGGAGGTTCTCAGTACACGGACACATGTAGAGATTCTCGTCTGTAGCATCACACATGATTGATTGAGATAACGTCGAAAAACTTCAGAGAGTTCCTTTAATCTCCACTATTACCGGTGAAACAGCAAACCTGGTCTGAGATCAGCTTTACTTCTATCAGCACCTCCGTTCTGACACACAGGGCTTTTTGCTCTGATGAATCAGGTATAAACCCTCCATCTCTGTGAAATGAtcccaaaggaaaaaaaaaaaaaaaaaaaacactgacgtATGCTTGCTGAGTGCAAATCCGTGTGCCTTCGAAATTCTGCTGCACACCAAGGAATTTGAATTTATCCGCGATGCCAAAAAAATCGCGTGTTCATAATTCATCACTACGTAAAGTACCCAAGAAGGCggcgttttgttttttttttttttttttttgaaccgGGGGGAAAACCGGAAAACTAGCCAACCCACAACAACCTCGATCTGACCCAATTAGTCAGTGTGTCTATGCCGTAAATTTTGCTGTGGGGACTTTTCCTTGTTTTCTCCTTCTTCGCCATTTTGAAACAAAACGGTCCAATTTCCCGTAACACAGACCGAGTCTCCTGCTCGAAGGTGAGCCAGAAAATTTCGGTGCTGACTCTATTGTTTTTCCGTCCGTCCTTCACCTCTGGGTGCAGCCGTAACGGTTGTCACGGTGACTGTTGCCTAGCCCACCGCCGTTTCCTTGCAGCCGCTATACGATATACTCCATTCTGTGCAAGCTGTTCTGGGACTCCAAGTCTCTGTTGTCACGTTTGTTAGTCCAGTGAGCTCGTTTTCCGTGCAGGCTGCCTGGCCGCTCGTCGCACTCCACTGGAGCGTACACTGGTCGCCGCGGAAACCGTGCTTTGTGGAGACGTTTTTCGGTGTCCGGGTCGTCCTCGGGCACCGCCGTCTCCTGAGGCGGGAGTTTCTGTTGTCCGATCTTGGCGCTGACGGCATTTTTCTCGATGCGGTTTTTGATCTGGTGCAGATTCTCGCGTGCGTTGTTGGCCGCATTGTTGTCCTCGGCAGTCGGTGCGGCTGACGGCGCGGAGGTGTACCCGGTTGCCGTGGCGCTCGCGTTTTGCTTGCGACGTCGTCGTACACACCACAATGCTGTCCACGCCAACGCCAACGCCCAGATCACTGTTGCCACGGAAACCAGCACTGGCACCAGAGTATCAGATGCTCACCGTTGGAGCTGCCGGGGGGCCTGTGCTGGACGCGTACCTCCGCGATGGCAGTGAGGATGGTACCGTTAGCGCTGCGTTTGCTCACCACGTCGATGATCCTGTCAGTGATCCCTTTAACTGGAGCGTGGCTGCTGCCGCTGTCATCAGAAACCTGCTGGAGAACA

Function

symbol description
jag1 Enables Notch binding activity and phospholipid binding activity. Involved in several processes, including circulatory system development; negative regulation of cell adhesion; and neuronal stem cell population maintenance. Located in plasma membrane. Colocalizes with membrane. Implicated in Alagille syndrome; congenital heart disease; multiple sclerosis; and tetralogy of Fallot. Biomarker of hepatocellular carcinoma; multiple sclerosis; osteoarthritis; and temporal arteritis.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446071 True 3169 lncRNA 0.41 2 15397668 15401270

Neighbor

gene id symbol gene type direction distance location
btbd3a btbd3,btbd3a,LOC107747408,LOC107594463,LOC107675618,LOC107583195,LOC103354797 coding downstream 106306 15286110 ~ 15291362 (-)
LOC113537242 NA coding downstream 124834 15262046 ~ 15272834 (-)
LOC113537336 NA coding downstream 139374 15250611 ~ 15258294 (-)
ndufaf5 ndufaf5,LOC107684300,LOC107583196,LOC107594415 coding downstream 154656 15236860 ~ 15243012 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding downstream 189528 15191305 ~ 15208140 (-)
srd5a2a srd5a2 coding upstream 23974 15425244 ~ 15436260 (-)
LOC113537512 slc9a3r2 coding upstream 81264 15482534 ~ 15494984 (-)
nthl1 NA coding upstream 96669 15497939 ~ 15501527 (-)
pkd1a pkd1 coding upstream 149656 15550926 ~ 15634447 (-)
tekt4 tekt4 coding upstream 318368 15719638 ~ 15727747 (-)
LOC117596121 NA non-coding downstream 239022 15158146 ~ 15158646 (-)
G376615 NA non-coding downstream 244548 15152892 ~ 15153120 (-)
G376613 NA non-coding downstream 249683 15147785 ~ 15147985 (-)
G376608 LOC108259073 non-coding downstream 265378 15132017 ~ 15132290 (-)
G376602 NA non-coding downstream 296656 15099016 ~ 15101012 (-)
G376670 LOC107729604,LOC103360699,LOC104950577,LOC105910653 non-coding upstream 59864 15461134 ~ 15462622 (-)
G376755 NA non-coding upstream 147122 15548392 ~ 15549785 (-)
G376758 NA non-coding upstream 210352 15611622 ~ 15653021 (-)
G376763 NA non-coding upstream 273537 15674807 ~ 15679171 (-)
G376786 NA non-coding upstream 279891 15681161 ~ 15683090 (-)
triobpa LOC108259073 other downstream 268412 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 436616 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 647934 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 685022 14697239 ~ 14712646 (-)
G376143 NA other downstream 713340 14682387 ~ 14684328 (-)
dpy30 dpy30,LOC107684266 other upstream 11154 15412424 ~ 15458205 (-)
G376956 NA other upstream 516358 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 528483 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 562606 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 751649 16152919 ~ 16164370 (-)

Expression


Co-expression Network