G376758


Basic Information

Item Value
gene id G376758
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15611622 ~ 15653021 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU446167
gaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacaggggcattgtcatgctggaacaggtttcagcctcttagttccagtgaagggaaattgtaacactacagcatacagagactttatatacaattgtgtgcttcaaactttgtagcaacagtttgaggaagaaccacatatgggtgcgatggtcaggtggACAGGCCTGTCACATGATTgatgggcgtggcctgtccagcttttattaaaattagtaATGTGTACAGTCTACTGTATAATTCATACACATTGCTGCTACTTTTACTTGAAATGTGTACTAATATTGTcagaaaataagaaatgttGAACCTGCGATtatacaatttttcattttttttcaccaagcaCTGctgaataaaaatctatttcaaTTTACTGGAGCCAGATATAGTGTGTGACAGTTAATTTGGTGAAATTGAGAAAATCTTGATTCAAAAGGCTTTGAACgtgaaatgtctgtgtgtagtcaCAGATTACTGGAAATTGCGCAGGGTAACGTAGCATTTTCCGTTTAAAATGAACGAAAAATCTTAAACACGCTTATCTTTTAAACTAGTTTATTTCCCTTAGACAAGAACTAAGTTTACATGCTAACATGATCTCAGTAAACTGATCAAGGCCAATCCAAATGACCTTCCTATCCAGTTGAACAAAGGGAAGGGAGTTCCAAATTTATGTAAGTATTTATGCAGgaaaagttcctcatattcagattTAGGTTATGCGCCTGCTGAAGTAAATTTTCTGAGCTCTGCGTTTAAGTTTTTCAGTAGCGTCCTGACCACACTGCCTATGAACACTGCCTATGAACACTGCCTATGAACAcaagcctgaaaaaaatcagggatagaaaatccCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446167 True 999 lncRNA 0.40 2 15611622 15653021

Neighbor

gene id symbol gene type direction distance location
nthl1 NA coding downstream 110095 15497939 ~ 15501527 (-)
LOC113537512 slc9a3r2 coding downstream 116638 15482534 ~ 15494984 (-)
srd5a2a srd5a2 coding downstream 175362 15425244 ~ 15436260 (-)
btbd3a btbd3,btbd3a,LOC107747408,LOC107594463,LOC107675618,LOC107583195,LOC103354797 coding downstream 320260 15286110 ~ 15291362 (-)
LOC113537242 NA coding downstream 338788 15262046 ~ 15272834 (-)
tekt4 tekt4 coding upstream 66617 15719638 ~ 15727747 (-)
LOC113537443 NA coding upstream 133228 15786249 ~ 15789136 (-)
LOC113537452 NA coding upstream 147201 15800222 ~ 15809810 (-)
LOC113537446 NA coding upstream 156896 15809917 ~ 15813455 (-)
exosc1 exosc1,LOC107598491,LOC107700859 coding upstream 189484 15842505 ~ 15852123 (-)
G376755 NA non-coding downstream 61837 15548392 ~ 15549785 (-)
G376670 LOC107729604,LOC103360699,LOC104950577,LOC105910653 non-coding downstream 149000 15461134 ~ 15462622 (-)
G376671 jag1 non-coding downstream 210352 15397668 ~ 15401270 (-)
LOC117596121 NA non-coding downstream 452976 15158146 ~ 15158646 (-)
G376615 NA non-coding downstream 458502 15152892 ~ 15153120 (-)
G376763 NA non-coding upstream 21786 15674807 ~ 15679171 (-)
G376786 NA non-coding upstream 28140 15681161 ~ 15683090 (-)
G376807 NA non-coding upstream 63171 15716192 ~ 15716946 (-)
G376840 NA non-coding upstream 125226 15778247 ~ 15779702 (-)
G376934 NA non-coding upstream 159345 15812366 ~ 15822505 (-)
dpy30 dpy30,LOC107684266 other downstream 153417 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 482366 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 650570 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 861888 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 898976 14697239 ~ 14712646 (-)
G376956 NA other upstream 264607 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 276732 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 310855 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 499898 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 563729 16216750 ~ 16221615 (-)

Expression


Co-expression Network