G376840


Basic Information

Item Value
gene id G376840
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15778247 ~ 15779702 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU446293
TAATGTTTTATGGTCCTTTCAGCACTTTTATGATGTTTTGGATCAAATAGAGTGTAAATTTTACTCTATTCTGTCACAAGTTTTAATGATTTAGAAAAAAAGCAAGCAGAAAAGAGTCATGattcaataaaatgtttattattatgttatagaCAAGCCTCTGAGGTCTTTGCCACACCAAACAATGAGTAAATGtgatgtaaattaaaaaaaatacacacttatacatatATTCAATCTCATGTGTCCAAACAtttgactggtagtgtacaTGTATAGTAATACTTTCTACAAAGGCCTTATGTGTAATGACCTTTAAATACCCGCATaacatatttataatgcattcataaggcgtTATACATGTTGTTATACTTATTTATGGAATTAGAGTTTATAGccatatttataatgcatttataaagtGTTAACAGTATGCATTATAATATATCATAATCACAAATACCAAAGAAATCCATTCCTATTTATTATGTTAAGTGCTAGATACACATAAAGAAAACCAAAGCCTTGCTTGGAAAGGCTGCTAACACCTTGAGAAGACATTCCCAAAGTTACGAAAACTTCAAAACCTCAACCAGAAATGATTAAATGCATCACAATGATTTTAATCTAACCTTTTTAATACACCTGTACAATTTAATGACCCTTATTCATTAAACTTACTAAGTGCTGGTTTAAATGAGCATTAGCCCCGCCCACGAGTACCTCATTTAAATATCATATGCACACCTGACTCTTACCTGACACCCACCTGCACACTGTAGCTTATGTAGGTTTTACGTTAATACGCCAATAATATAATGATTTGGTATGCTACATATAATCACCATGGATACAAATAGGAAAGAAATCACACGGACAGAAAATAGTTTCCGTGAACTGGAAGAGCTGATGTCCCAGATGAACTCTACACTTACTTTATGATCAGATTAACAACTTAATAATGAATacagcctattttttttttcttaaagaattTCGAGATAACATATAATCCCACTGTTACTGCAGCACACCGAGGGTCGTCCATGTTGTGCTGGATGGCTCACTCGTGCGGGGCATGACTTCATTAATAACGATGATATATGATAGCGTTCGCTGCAGGTTGGATTACGGTGGGCAGAACCTGCGGCTGGATGACCCTAACAGCCTGAGATGGATGCTGGATCACCAGAGCAGGTTGAGCAGCCTGGATTATGGTTTGTGGAGCCATGCCCGGGACCACCACTGCCGACCTTGGGGGTTGGATTATCACATGATTCCCGCCACCCTGGATCACTTGGACCCTCGGCTGACCCGCGCCAGCTCCATAAACAGAGTACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446293 True 1346 lncRNA 0.37 2 15778247 15779702

Neighbor

gene id symbol gene type direction distance location
tekt4 tekt4 coding downstream 50500 15719638 ~ 15727747 (-)
pkd1a pkd1 coding downstream 143800 15550926 ~ 15634447 (-)
nthl1 NA coding downstream 276720 15497939 ~ 15501527 (-)
LOC113537512 slc9a3r2 coding downstream 283263 15482534 ~ 15494984 (-)
srd5a2a srd5a2 coding downstream 341987 15425244 ~ 15436260 (-)
LOC113537443 NA coding upstream 6547 15786249 ~ 15789136 (-)
LOC113537452 NA coding upstream 20520 15800222 ~ 15809810 (-)
LOC113537446 NA coding upstream 30215 15809917 ~ 15813455 (-)
exosc1 exosc1,LOC107598491,LOC107700859 coding upstream 62803 15842505 ~ 15852123 (-)
pgam1b pgam1b,pgam1a,LOC108258456,LOC107700858,LOC103038634,LOC107598490,LOC107703810,LOC108436383 coding upstream 73516 15853218 ~ 15858317 (-)
G376807 NA non-coding downstream 61301 15716192 ~ 15716946 (-)
G376786 NA non-coding downstream 95157 15681161 ~ 15683090 (-)
G376763 NA non-coding downstream 99076 15674807 ~ 15679171 (-)
G376758 NA non-coding downstream 125226 15611622 ~ 15653021 (-)
G376755 NA non-coding downstream 228462 15548392 ~ 15549785 (-)
G376934 NA non-coding upstream 32664 15812366 ~ 15822505 (-)
G376961 NA non-coding upstream 102271 15881973 ~ 15883423 (-)
G376982 NA non-coding upstream 167946 15947648 ~ 15948079 (-)
G377087 NA non-coding upstream 385996 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 398908 16178610 ~ 16179122 (-)
dpy30 dpy30,LOC107684266 other downstream 320042 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 648991 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 817195 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 1028513 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 1065601 14697239 ~ 14712646 (-)
G376956 NA other upstream 137926 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 150051 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 184174 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 373217 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 437048 16216750 ~ 16221615 (-)

Expression


Co-expression Network