khsrp (khsrp)


Basic Information

Item Value
gene id khsrp
gene name khsrp
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15929753 ~ 15942730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU446429
CCGCgttgctttcttcttcttcttcttcttcttcgtcttcctTTCCTCGTTAACTTGGCTTTTTCTCGCCTTCCAGCTCCGGCGCGCGCCTTCCCCGGGcccttcttctttctctcttctctccctctctctcgcgcgcgctctctctgtctatctgtctatctctttctctctgcacgGATTGACACCGGAACGCACGAGGACAGTGATGTCGGAGTACAGCGCGGTGCCGCCGCCGCCTCCCGGGgccgcagcagcagcagcagcactgggAGCCGGTGGGATAAAGAAGGACGCGTTCGCGGACGCGGTGCAGCGCGCGCGgcagATTGCAGCTAAGATCGGTGGAGACGTCGCAGGCGGCCCTGTGAGCAAGAACGGAGGTACGGAGGGTTATCCTTTCTCAGCACAGAAACGATCGCTGGAGGAtggagATCAGCCGGACAGTAAGAGGATGGCTCCTCAGAGTGACAGGGACAACGCTACAGCGCTGTCTATCAGCGCTCAGCTGGCTGCTCTCTCTCAGCAGAGtGGACGTCCTTCTGCTATAACGGAGGAGTACAGAGTTCCTGACGGCATGGTTGGCCTCAaCAGCGGAGGTTTACCCGATAGAAGCGTCTCTCTCACTGGGACTCACGACTCCATCCAGAAGGCTAAGATGCTGTTAGATGACATCGTGTCGCGGGGGCGGGGCACACCGCCCACCTCCTTCCACGAGGCCAATGGGAGCGGCCACATGCAGGAGATGATCATCCCGGCGGGAAAAGCCGGCCTCGTCATCGGCAAGGGCGGAGAAACCATCAAACAGCTCCAGgagcgtGCTGGTGTGAAGATGATTTTGATACAGGATCCATCTCAGGGACCGAACATAGACAAACCCCTCCGCATCATTGGAGATCCCTAcaaagtgcagCAAGCGAGGGAGATGGTGCAGGAGATTCTGCGTGAGAGAGATCAGTTTGGAGGAGACAGGAACGAATACGGCTCCCG
>XM_034300061.1
AAACGCGAGCCAATAGAAACGCGCGCTCGGGTGCCGCGGCGCGACCGCgttgctttcttcttcttcttcttcttcttcgtcttcctTTCCTCGTTAACTTGGCTTTTTCTCGCCTTCCAGCTCCGGCGCGCGCCTTCCCCGGGcccttcttctttctctcttctctccctctctctcgcgcgcgctctctctgtctatctgtctatctctttctctctgcacgGATTGACACCGGAACGCACGAGGACAGTGATGTCGGAGTACAGCGCGGTGCCGCCGCCGCCTCCCGGGgccgcagcagcagcagcagcactgggAGCCGGTGGGATAAAGAAGGACGCGTTCGCGGACGCGGTGCAGCGCGCGCGgcagATTGCAGCTAAGATCGGTGGAGACGTCGCAGGCGGCCCTGTGAGCAAGAACGGAGGTACGGAGGGTTATCCTTTCTCAGCACAGAAACGATCGCTGGAGGAtggagATCAGCCGGACAGTAAGAGGATGGCTCCTCAGAGTGACAGGGACAACGCTACAGCGCTGTCTATCAGCGCTCAGCTGGCTGCTCTCTCTCAGCAGAGtGGACGTCCTTCTGCTATAACGGAGGAGTACAGAGTTCCTGACGGCATGGTTGGCCTCATCATTGGTCGAGGAGGAGAGCAGATCAATAAGATCCAGCAGGAGTCGGGATGTAAGGTTCAGATCGCGCCAGaCAGCGGAGGTTTACCCGATAGAAGCGTCTCTCTCACTGGGACTCACGACTCCATCCAGAAGGCTAAGATGCTGTTAGATGACATCGTGTCGCGGGGGCGGGGCACACCGCCCACCTCCTTCCACGAGGCCAATGGGAGCGGCCACATGCAGGAGATGATCATCCCGGCGGGAAAAGCCGGCCTCGTCATCGGCAAGGGCGGAGAAACCATCAAACAGCTCCAGgagcgtGCTGGTGTGAAGATGATTTTGATACAGGATCCATCTCAGGGACCGAACATAGACAAACCCCTCCGCATCATTGGAGATCCCTAcaaagtgcagCAAGCGAGGGAGATGGTGCAGGAGATTCTGCGTGAGAGAGATCAGTTTGGAGGAGACAGGAACGAATACGGCTCCCGgatgggaggaggaggaggaggaggaggtggaggtggaggtggaggtggaatagaggtgccTGTGCCGCGTCACTCCGTGGGCGTCGTGATTGGCCGAAACGGTGAGATGATCAAAAAGATTCAGAACGATGCAGGAGTCAGGATACAGTTCAAACCAGatgaCGGGAGTGGACCTGATAAGGTCGCTCACATCATGGGGCCTCCTGACCGCTGTGAGCACGCAGCCGGCATCATCAACGAGCTCCTACAGAGCATCCGCGTCCGAGAGGAGGGTGGAGGGggacCCCCTGGTCCTCCCGGGACAGGTATGCCTCCAGGTGGGCGTGGCAGGGGGCGTGGCCCAGGTAACTGGGGTCCCCCTGGTGGCGAGATGACCTTCTCTATCCCCGCCCACAAATGCGGCCTGGTGATTGGCCGAGGAGGCGAGAACGTGAAGTCGATCAACCAGCAGACAGGCGCGTTCGTGGAGATCTCGCGCCAGCCGCCGCCCAACGGAGACCCCAACTTCAAACTGTTCACCATCCGGGGGAATCCGCAGCAGATCGACCACGCCAAGCAGCTCATCGAGGACAAGATCGAGGGTCCCCTGTGTCCTGTAGGTCCCGGTCCTGGTGGTCCCGGTCCCGCCGGCCCAATGGGTCCTTACAACCCGAACCCATATCAGCCCGGACCTCCGGGAGCCCCACCACAtggaGGACCTCCAGGTGCCCAGTACCCCCCTCAGGGTTGGGGAAATGCCTACCAGCAGTGGCAGCCGCCTGCACCTCATGACCCCAGTAAAGCTGCAGCAGATCACAGTGCTGCCTGGGCAGCGTATTATGCGCAGTACTACCAGCAGCCTGGTGGAGGCGCTATGCCCGGCCAGACACCCAGCGCGCAGCCCGCTGCTCCCGCCCCCGCCGACCAGAGCCAAGCGGCCCAGAACACGGCACAGCCCGACTACACCAAGGCCTGGGAGGAGTACTACAAGAAAATGGGTGAGActcaggCAGGTGGTGGTGGCGCTGCTCCAGCAGCAGGTGGAGCTCCAGCAGCGACAGGAGCAGCAGGACAGACTGACTACAGCGCCGCCTGGGCCGAGTACTACAGACAACAAGCGGCTTATTACGGCCAAAACCCACAGAACCCCGGACAGCCTGCAGCCACGCAGCAGGGCCAAcagACGCAGTAAActtggccacgcccacttcctcCCCAGTGACTTCCTCCCCTTTTGCTTTTTGTCCCCCCGCCTTCCTCcgtcctccttcctcctcctcctcctccgt
>XM_034300062.1
AACGCGAGCCAATAGAAACGCGCGCTCGGGTGCCGCGGCGCGACCGCgttgctttcttcttcttcttcttcttcttcgtcttcctTTCCTCGTTAACTTGGCTTTTTCTCGCCTTCCAGCTCCGGCGCGCGCCTTCCCCGGGcccttcttctttctctcttctctccctctctctcgcgcgcgctctctctgtctatctgtctatctctttctctctgcacgGATTGACACCGGAACGCACGAGGACAGTGATGTCGGAGTACAGCGCGGTGCCGCCGCCGCCTCCCGGGgccgcagcagcagcagcagcactgggAGCCGGTGGGATAAAGAAGGACGCGTTCGCGGACGCGGTGCAGCGCGCGCGgcagATTGCAGCTAAGATCGGTGGAGACGTCGCAGGCGGCCCTGTGAGCAAGAACGGAGGTACGGAGGGTTATCCTTTCTCAGCACAGAAACGATCGCTGGAGGAtggagATCAGCCGGACAGTAAGAGGATGGCTCCTCAGAGTGACAGGGACAACGCTACAGCGCTGTCTATCAGCGCTCAGCTGGCTGCTCTCTCTCAGCAGAGtGGACGTCCTTCTGCTATAACGGAGGAGTACAGAGTTCCTGACGGCATGGTTGGCCTCATCATTGGTCGAGGAGGAGAGCAGATCAATAAGATCCAGCAGGAGTCGGGATGTAAGGTTCAGATCGCGCCAGaCAGCGGAGGTTTACCCGATAGAAGCGTCTCTCTCACTGGGACTCACGACTCCATCCAGAAGGCTAAGATGCTGTTAGATGACATCGTGTCGCGGGGGCGGGGCACACCGCCCACCTCCTTCCACGAGGCCAATGGGAGCGGCCACATGCAGGAGATGATCATCCCGGCGGGAAAAGCCGGCCTCGTCATCGGCAAGGGCGGAGAAACCATCAAACAGCTCCAGgagcgtGCTGGTGTGAAGATGATTTTGATACAGGATCCATCTCAGGGACCGAACATAGACAAACCCCTCCGCATCATTGGAGATCCCTAcaaagtgcagCAAGCGAGGGAGATGGTGCAGGAGATTCTGCGTGAGAGAGATCAGTTTGGAGGAGACAGGAACGAATACGGCTCCCGgatgggaggaggaggaggaggaggaggtggaggtggaggtggaggtggaatagaggtgccTGTGCCGCGTCACTCCGTGGGCGTCGTGATTGGCCGAAACGGTGAGATGATCAAAAAGATTCAGAACGATGCAGGAGTCAGGATACAGTTCAAACCAGatgaCGGGAGTGGACCTGATAAGGTCGCTCACATCATGGGGCCTCCTGACCGCTGTGAGCACGCAGCCGGCATCATCAACGAGCTCCTACAGAGCATCCGCGTCCGAGAGGAGGGTGGAGGGggacCCCCTGGTCCTCCCGGGACAGGTATGCCTCCAGGTGGGCGTGGCAGGGGGCGTGGCCCAGGTAACTGGGGTCCCCCTGGTGGCGAGATGACCTTCTCTATCCCCGCCCACAAATGCGGCCTGGTGATTGGCCGAGGAGGCGAGAACGTGAAGTCGATCAACCAGCAGACAGGCGCGTTCGTGGAGATCTCGCGCCAGCCGCCGCCCAACGGAGACCCCAACTTCAAACTGTTCACCATCCGGGGGAATCCGCAGCAGATCGACCACGCCAAGCAGCTCATCGAGGACAAGATCGAGGGTCCCCTGTGTCCTGTAGGTCCCGGTCCTGGTGGTCCCGGTCCCGCCGGCCCAATGGGTCCTTACAACCCGAACCCATATCAGCCCGGACCTCCGGGAGCCCCACCACAtggaGGACCTCCAGGTGCCCAGTACCCCCCTCAGGGTTGGGGAAATGCCTACCAGCAGTGGCAGCCGCCTGCACCTCATGACCCCAGTAAAGCTGCAGCAGATCACAGTGCTGCCTGGGCAGCGTATTATGCGCAGTACTACCAGCAGCCTGGTGGAGGCGCTATGCCCGGCCAGACACCCAGCGCGCAGCCCGCTGCTCCCGCCCCCGCCGACCAGAGCCAAGCGGCCCAGAACACGGCACAGCCCGACTACACCAAGGCCTGGGAGGAGTACTACAAGAAAATGGctcaggCAGGTGGTGGTGGCGCTGCTCCAGCAGCAGGTGGAGCTCCAGCAGCGACAGGAGCAGCAGGACAGACTGACTACAGCGCCGCCTGGGCCGAGTACTACAGACAACAAGCGGCTTATTACGGCCAAAACCCACAGAACCCCGGACAGCCTGCAGCCACGCAGCAGGGCCAAcagACGCAGTAAActtggccacgcccacttcctcCCCAGTGACTTCCTCCCCTTTTGCTTTTTGTCCCCCCGCCTTCCTCcgtcctccttcctcctcctcctcctccgt

Function

symbol description
khsrp Enables mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Orthologous to human KHSRP (KH-type splicing regulatory protein).

NR:

description
PREDICTED: far upstream element-binding protein 2 isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU446429 False 990 TUCP 0.58 9 15933637 15942686
XM_034300061.1 True 2374 mRNA 0.61 18 15929753 15942730
XM_034300062.1 False 2367 mRNA 0.61 18 15929753 15942729

Neighbor

gene id symbol gene type direction distance location
avpi1 NA coding downstream 34758 15886599 ~ 15894995 (-)
cdc25d LOC108258441 coding downstream 60199 15859404 ~ 15869554 (-)
pgam1b pgam1b,pgam1a,LOC108258456,LOC107700858,LOC103038634,LOC107598490,LOC107703810,LOC108436383 coding downstream 71436 15853218 ~ 15858317 (-)
exosc1 exosc1,LOC107598491,LOC107700859 coding downstream 77630 15842505 ~ 15852123 (-)
LOC113537446 NA coding downstream 116298 15809917 ~ 15813455 (-)
slc25a23a slc25a23a,LOC108258471,LOC103026535,LOC107747161,LOC107594260 coding upstream 3121 15945851 ~ 15955280 (-)
LOC113537394 NA coding upstream 44057 15986787 ~ 15999994 (-)
LOC113537693 NA coding upstream 69542 16012272 ~ 16024511 (-)
LOC113537692 NA coding upstream 89269 16031999 ~ 16037975 (-)
LOC117596132 NA coding upstream 102998 16045728 ~ 16051187 (-)
G376961 NA non-coding downstream 46330 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 107248 15812366 ~ 15822505 (-)
G376840 NA non-coding downstream 150051 15778247 ~ 15779702 (-)
G376807 NA non-coding downstream 212807 15716192 ~ 15716946 (-)
G376786 NA non-coding downstream 246663 15681161 ~ 15683090 (-)
G376982 NA non-coding upstream 4918 15947648 ~ 15948079 (-)
G377087 NA non-coding upstream 222968 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 235880 16178610 ~ 16179122 (-)
G377125 NA non-coding upstream 321173 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 406647 16349377 ~ 16350060 (-)
G376956 NA other downstream 9200 15917628 ~ 15920553 (-)
dpy30 dpy30,LOC107684266 other downstream 471548 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 800497 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 968701 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 1180019 14740132 ~ 14749734 (-)
vps54 vps54,LOC107709616 other upstream 21146 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 210189 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 274020 16216750 ~ 16221615 (-)
LOC113537389 NA other upstream 478531 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 623523 16566253 ~ 16583137 (-)

Expression


Co-expression Network