G377171


Basic Information

Item Value
gene id G377171
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16349377 ~ 16350060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU446815
atagtgtaacatagtatagtgcagtatagtatagtgtaggagaagtgcaattaattttttttaaagaaattccACGCTGCACTGGGTTGATGTCCCTAGAGACTGCAGAATACCCAGAATGCACTTTTTCTGTTTGTATTGATTAGGAAGTAGGGCAGGATATCGAACAAAGGGCGAGTGTCATTACTGCATTCTCTCTGTGAATAATAACAAGCTTTAGAATAATTAACAAACAATAATAGTGTAAATGTTTGGAAGTTATATGACTTTTTCCCCCCAGGATCAacacatgaatacacacacatttattctccCAATTCCATAATAACGTAAAATAACAATCATTCAAATACTGCAACCATTTGATCACCTTTGacctttgaattttttttttattatttagggtattttactgtttagtgtgtatgtgaaatcctttttgttgttttacatTGTTGTACTTTATTGTCTTTACCTtcgggaaagaaaaaaacacaatatccTGGTTTAGCCAGTGTGGTGTGAGGATACATTCAGCCACAGTTTCAATACATTTGCTGTTTTACGAAGTTGTAAATACTCATGGATCTTTTTGGAGTCCATTCATGAACCACATAAGAGCAGTGTAAGAGGCATCTGGACAAATCAGAACCACAGATCATTAGAAATACGTTTAAAGGTgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446815 True 684 lncRNA 0.34 1 16349377 16350060

Neighbor

gene id symbol gene type direction distance location
dnajb1b dnajb1 coding downstream 920 16341237 ~ 16348457 (-)
LOC113537406 LOC108258437 coding downstream 103086 16238209 ~ 16246291 (-)
LOC113537690 NA coding downstream 113230 16224807 ~ 16236147 (-)
si:ch211-286b5.4 LOC108258440 coding downstream 133342 16209255 ~ 16216035 (-)
nanos3 NA coding downstream 140816 16207565 ~ 16208561 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602 coding upstream 18438 16368498 ~ 16373207 (-)
samd1b samd1,LOC108258478,LOC107573600,LOC107580959,LOC103458189,LOC108442215,LOC106534668 coding upstream 29246 16379306 ~ 16388207 (-)
prkacab prkaca,prkacab,LOC107694605,LOC107703755,LOC106526233 coding upstream 48859 16398919 ~ 16411731 (-)
asf1bb asf1b,asf1bb,LOC107747137,LOC103026007,LOC107703766 coding upstream 63889 16413949 ~ 16418007 (-)
LOC113537390 LOC108258708,LOC108258415 coding upstream 147725 16497785 ~ 16525406 (-)
G377125 NA non-coding downstream 83730 16263903 ~ 16265647 (-)
G377084 NA non-coding downstream 170255 16178610 ~ 16179122 (-)
G377087 NA non-coding downstream 180181 16165698 ~ 16169196 (-)
G376982 NA non-coding downstream 401298 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 465954 15881973 ~ 15883423 (-)
G377172 NA non-coding upstream 189 16350249 ~ 16350459 (-)
G377191 NA non-coding upstream 39034 16389094 ~ 16390803 (-)
G377244 NA non-coding upstream 137730 16487790 ~ 16488131 (-)
LOC113547464 NA non-coding upstream 248853 16598913 ~ 16600222 (-)
G377359 NA non-coding upstream 256270 16606330 ~ 16607547 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other downstream 127762 16216750 ~ 16221615 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other downstream 185007 16152919 ~ 16164370 (-)
vps54 vps54,LOC107709616 other downstream 364418 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 406647 15929753 ~ 15942730 (-)
G376956 NA other downstream 428824 15917628 ~ 15920553 (-)
LOC113537389 NA other upstream 71201 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 216193 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 271107 16621167 ~ 16741989 (-)
G377416 LOC108258724 other upstream 494952 16845012 ~ 16851663 (-)
LOC113525650 LOC108258801 other upstream 826722 17176782 ~ 17194992 (-)

Expression


Co-expression Network