G377422 (LOC108258724)


Basic Information

Item Value
gene id G377422
gene name LOC108258724
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16856779 ~ 16858709 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447151
acaaacacacacacacacacccctatatGCACAAACAATAAAGAACATAAAACTCAGTCAGAAGAATCGACTGAACTATACAGAAAGCTTTCTAACAAAAGCAGCAACAAAAGTCCTCTCACTGTACAACAGGACCgacatcatcaacatcacaaACATCCTCGAATATCATCACGTTTCTCATCACCGGCTTTTAAACGCAACGTCATACAGGACACTCGGGTTCAACAGTCCACTTTCGAAAACTGTTTACTTGATCAGTTAGcaatacacatatttacacaagaTTTACACAAGTTTATCTTAATCAAGgatatattgttttaaaactgagataaattacattttcagtcGTGGCCAATAAgtgaacattgttttttttttttttttttttgaagagttTCAGAATTGTACTCATTTTTcattactgaaaaaataaaaacatttcaatagtGGATTCAGACCTAGTTAGATTCGTACAGGATGTATTGTTATGACAGCCCTTGTACaggaggtcacacacacacacacacacacacacacacacacacacacacacacacacacacacgcttttccTCTGGCCAGTGTGGCACGGTACAGCTCTACCCGAGGACTCTCCGGGTCATCCACCACTGTCTGTTTAACGCACCCTTGTGAGTAGGAGTTCCTCTGGAGGTTGTGCTGACTAATGATTGGCATGATTAGTAAATTACTAAGCAAATTTTACAAAtatagttctggaactaaattaaaaacaaacagagctCTCTTGTGGTGTACCTCAGGGCTCCATCATGGGCCCTATACAGTTTAATTGTTTTACGCTGTATCTCCTCCAAATGGCTCTCGGCAACTTCTCTTTAACTGTCTCAGGGCTATTAAATGATGGACTTCCTTCAGCTGAATAAAGTTAAGACAGATGTCATTATATTTGGTCATCCAGATTCTACTAGAGCTGTAGATAACAAACTGGGGCtactaaaatataatatagaaaaataattttaaaaaaggtcatTTTTGAATATTGACCCTAACATGATTAGTTAAAACTGCATAAAATTGACAAATGGAATATTTCTTAgacaattttttaaagattcagttCATGTGTCTGTGGTACTGTGGTCCATCTTAATCACAGGGTGAAGCACTGATCATCAGACAGCCAGATACTTCAATCTTAGTGAAAATAGAGCAGAAAATAGACATTTTGTACCATGATGAGAAACTGAAAATGGGAATTTAGATAGGGTAGCTCACTTGGCACACAATTCAGAATGGCACAACATGCGGAATCAAGCTGTGCTGTAACACAATGTCCAGCGGAAAAGctctaataacacacactcagtctcaGGCTTTGAGTCTTTAGATCCTTCATATCGGCTCCGAACTGGCAGCAACAGCTACAAACAACACACAGCGTGCTGTTTATACAACTCCAAAAACAGCTTCATCATTGTAGGTACCAAAGACCCTAAATTTAGAGTAGGTCTTTGATTAGATGCCCACAAAATTGATTGTACACGTGATCCTGTCCGTGTTTTCAGTTCACGTCCATATGGCAGGGGTTACTTCCTGATTCCACGGCGGCCTGGTACATCAGTAAAAAGTCTTGATATTGAGGAGCGCAGCCAAGCCACGCCTCGCCGAACCTTACGGCTCCCGTGAACAGAAACTCCtcaagccccgcccactgtcCCACTCCTGAATCTGATCCCTGCTCCACCTGGATGGCGCAACTCCGTGGGACCATTACACGTCCTGACCACCGGCTGCGCCCTCGTCCCTCGAAAACGCGTCGCCGCTTTTGGCGAAACAGGCGACTCACTGACACCAGCATCGACGCCTGCTGCTCATCATCACCGCCGTCCATGACGGACTCGATGCTGCCTCTCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU447151 True 1907 lncRNA 0.42 2 16856779 16858709

Neighbor

gene id symbol gene type direction distance location
LOC113537398 NA coding downstream 63058 16788121 ~ 16793721 (-)
si:dkey-27j5.5 LOC108258720 coding downstream 113941 16739492 ~ 16742838 (-)
LOC113537431 LOC108258715 coding downstream 155649 16700097 ~ 16701130 (-)
gcgrb LOC108258714,LOC108411214 coding downstream 193682 16630624 ~ 16663097 (-)
zgc:65894 tubb4a,LOC107711200,LOC103367161,LOC108411210,LOC103372938,LOC100712088,LOC108258713,LOC103468788 coding downstream 267149 16583379 ~ 16589630 (-)
LOC113537435 LOC108258733 coding upstream 6519 16865228 ~ 16872437 (-)
LOC117596109 NA coding upstream 30055 16888764 ~ 16898002 (-)
LOC117596110 NA coding upstream 56704 16915413 ~ 16916826 (-)
LOC117596111 LOC108258733 coding upstream 58144 16916853 ~ 16920580 (-)
LOC113537424 NA coding upstream 84407 16943116 ~ 16948799 (-)
G377359 NA non-coding downstream 249232 16606330 ~ 16607547 (-)
LOC113547464 NA non-coding downstream 256557 16598913 ~ 16600222 (-)
G377244 NA non-coding downstream 368648 16487790 ~ 16488131 (-)
G377191 NA non-coding downstream 465976 16389094 ~ 16390803 (-)
G377172 NA non-coding downstream 506320 16350249 ~ 16350459 (-)
G377441 NA non-coding upstream 136689 16995398 ~ 16995649 (-)
G377474 NA non-coding upstream 174194 17032903 ~ 17052265 (-)
LOC117596165 NA non-coding upstream 209827 17068536 ~ 17078161 (-)
G377847 LOC108261577,LOC108258774 non-coding upstream 383126 17241835 ~ 17253715 (-)
G377874 NA non-coding upstream 457842 17316551 ~ 17316980 (-)
G377416 LOC108258724 other downstream 5116 16845012 ~ 16851663 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other downstream 114790 16621167 ~ 16741989 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other downstream 273642 16566253 ~ 16583137 (-)
LOC113537389 NA other downstream 381348 16421261 ~ 16475431 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other downstream 635164 16216750 ~ 16221615 (-)
LOC113525650 LOC108258801 other upstream 318073 17176782 ~ 17194992 (-)
G377862 NA other upstream 407520 17266229 ~ 17268030 (-)
LOC113526761 NA other upstream 474587 17333296 ~ 17338806 (-)
ubl5 ubl5 other upstream 849259 17707968 ~ 17712629 (-)
G377994 LOC108258810 other upstream 934977 17793686 ~ 17814445 (-)

Expression


Co-expression Network