LOC113537676 (LOC108258766,LOC108258734,LOC108258743)


Basic Information

Item Value
gene id LOC113537676
gene name LOC108258766,LOC108258734,LOC108258743
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17000483 ~ 17017835 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447180
GTCCTGTATGCCAGAGTTGTATGCCGGAGTGCTGGTGACCCCGGGAGCACTGAGAGTTCTGTTCTCAAAGCTTCTGGCTCTGAGGACAAGGAGGTTCAGTACGCTAGTATTAGATTTACTCACACCGGTGCTGACTACAGGCCTTCCAATGCTGAGGATCCCACTGTGATCTACAGCAGAGTGAATTAATCAACATTCACCCATTTATTCAACCTCACCACAGCTCCC
>TU447183
CGCAGGCCGGACAGCTGATGATGTGTATCACACACTTGCAactttTCATCCCCGTCCTACTGCTGATACACCCACATCCTCTGACTACTAGACTGCAGCAaCTTTGAAGAACATGATGAGTCCCGAAACAGCTGATGAATAGAGAGAGCTCCTCACTGAAACAGAGAAACTGAATCGCTCCTTTACACCAGCAACATCAGCAACTCACAGACATTTAAAGCAGCTTTAATCATTTTATAGCAGTGTGTGAAGTGCTTTTTTC
>XM_034299902.1
TGTCCCTTAAAACAGCTTCTCTGTTTTGTCTGATCTTTCTCCTCTTGATGACAGGAGCTCTTGGGAATGAATGGAGTGTGATATACAGCCAACTAAATCTCTGTGCTTTAAAAGGATCTACAGTGTTTATGAACGGCTCTTACACACACCCAACACGTCTTACAGTGAAGGACAGCTTTTGGTTAATAAACCCAGTTAAAGGTAAAGAGACAACTGATCTGCGTAATGAACCAGGTTACTCAGGCAGAGTGGAGTATTTAGGAGATGAACAGAAACACTTCTCCCTCAGACTGAGTGACGTGAAGAAAACAGATGAACACATGTACTGCTTCAGAGTCATAACAAAcgaagaaacagaaaaattcCTGGGTTTTCCTGGAGTTACACTCACTGTTACAGATCTTCAGGTGATCGCTCCTGCAGAAGTGACAGAGGGACAATCAGCCGTTCTGACCTGTAAAACCACCTGCAGTCTGACTGATCCCACATTCATCTGGTACAAAAACAGCCGTGGTTTAACCACAAACACCACCAAGAGCAATGAAGTCCACCTGCAGCGGGTCAGCAGTGAGGATGCAGGCAGTTATAGCTGTGCTGTAAGAGGATATGAACATCTCCCCTCTCCTGCTCAAACCCTCAGCGTCAGATATCCTCCAAAGAACGTCTCAGTGTCCATCATCTCCTCTGGTAAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGATCTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACATCATCTCCAACATCAGCACTGAGGACAGTGGAGAGTACAAGTGCAAGTGCAGTAATGAAATCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTCGAGACCTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAACATCAGCACTGAGGACAGCGGAGAGTACAAGTGCAAGTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAACTCCTCTGGTGAGATAGTGGAGGGCAGTTCAGTGAttctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGAATGAATCGTCACCTATAGGATCTGGACAGAGTTACAGAGCTCTACAGAGTGGACAGTACTACTGCGAGGCTCAGAATAAACACGGCTCTAACAGATCAGCTGCAGTGTCCGTCACTTTAAACGGGTCTCAGAGCTTAGGTGTGTACGCAGGTGTTGGggctgttgtgtttgtgtgtgtttgtctgattGTCGCCTTCTTGTTTATAAGgaaaaataaaagaattgggTCAACAGCAGAGCAAAGTTTAAAACagGATAATATTTATGCCAATGTAGCAATGACAAATCCAATCAACACTGTACCTGATTCAGCTTCGGCCAATCAGGATGAAGTCCTGTATGCCAGAGTTGTATGCCGGAGTGCTGGTGACCCCGGGAGCACTGAGAGTTCTGTTCTCAAAGCTTCTGGCTCTGAGGACAAGGAGGTTCAGTACGCTAGTATTAGATTTACTCACACCGGTGCTGACTACAGatggctgggtgcgtgtgcgttGCTTAACttgggaagagatggcaccaggatgcactatgggaagaagacaagccggCAGATCGTAGTTTGGTTGCTGGACATGAAGGTCGAGAAGGCACAaaGCTTTCCATCAGTGATGTCCCTCAAAATGGCTTCTCCACTTTATCTGATCTTTCTGTTCATGATCTCAGGAGCTCTTGGGAATGAATGGAGTGTGAAATACAGCCAACTAAATCTCTGTGCTATAAAAGGATCTACAGTGTTTATGAACGGCACTTACACACACCCAACACGTCTTACAGTGAAGAACAGGTTTTGGTTAATAAACCCAGTTGAGGATAAAGAGCCGACTGATCTGCGTAATGAAGCAGGTTACTCAGACAGAGTGGAGTATTTAGGAGATGAACAGAAACACTTCTCCCTCAGACTGAGTGATGTGAAGAAAACAGATGAACACATGTACTACTTCAGAATCAGAACAAACGAAGAAACAGAAAGATGGCTGGGTAAACCCGGAGTTACACTCACTGTTACAGATCTTCAGGTGATCGCTCCTGCAGAAGTGTCAGAGGGACAATCAGCCGTTCTGACCTGTAAAACCACCTGCAGTCTGACTGATCCCACATTCATCTGGTACAAAAACAGCCGTGGTTTAACCACAAACACCACCAAGAGCAATGAAGTCCACCTGCAGCGGGTCAGCAGTGAGGATGCAGGCAGTTATAGCTGTGCTGTAAGAGGATATGAACATCTCCCCTCTCCTGCTCAAACCCTCAGCATCAGATATCCTCCAAAGACCGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGAAGACATCAGTAGGAAAAGGAAAGACCTACATCATCTCCAAGATCAGAACTGAGGACAGTGGAGAGTACAAGTGCAGTTGCAGTAATGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGATCTACACCTGGTTTAAGGGGAAGACATCAGTAGGAAAAGGAAAGACCTACATCATCTCCAAGATCAGAACTGAGGACAGTGGAGAGTACAAGTGCAGTTGCAGTAATGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAAGTACACCTGGTTTAAGGAGAAAGAATCATCACCTGTAGGATCTGGACAGAGTTACAGAGCTCTACAGAGTGGACAGTACTACTGCGAGGCTCAGAATAAACACGGCTCTGAGAGATCAGCTGCAGTGTCCATCATTTTAAATGGTTTCCTTCATGGTTCTTTGATTGTGTATGTGGCTGTTGGAGTTGGACTTTTTGGGCTTGCAGCTCTTCTCTCTGCACTCTTCTGGCTGAGAtgcaagagaaagaagaaaaaggaagatgATGGTGACTATCAGACCGCTGGGCCGAGTGCTAAAGACGACACGTACGCAGCTCTCAATCTCGCAGGCCGGACAGCTGATGATGTGTATCACACACTTGCAactttTCATCCCCGTCCTACTGCTGATACACCCACATCCTCTGACTACTAGACTGCAGCAaCTTTGAAGAACATGATGAGTCCCGAAACAGCTGATGAATAGAGAGAGCTCCTCACTGAAACAGAGAAACTGAATCGCTCCTTTACACCAGCAACATCAGCAACTCACAGACATTTAAAGCAGCTTTAATCATTTTATAGCAGTGTGTGAAGTGCTTTTTTCTACTGCCAGCAGGTTAGGACTGTTCCAGTCAGCTGTTGAGTTTTCACTTGTTAgtgattgtttcttttttgtgaatatttgaAGTGATTAAAGGCATTGAGGCTCAACTGAAGTCCAGAATGTAAATATTCACCAGAGAATGTGTGTTAAGTAAGAaattaaacagtgtgtgtgtgctgtaatagTTATAGGTCCTGATTGGCACCCAATGTTTCTGGAATAGACTCCTGAttcactgtgactctgaccaggataaagtgcttgtATATATCGCACTACAGACACTTAAACTAGCCAAAGCTGTTCATATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU447180 False 228 lncRNA 0.50 2 17006165 17006484
TU447183 False 262 lncRNA 0.45 3 17016819 17017523
XM_034299902.1 True 4067 mRNA 0.46 22 17000483 17017835

Neighbor

gene id symbol gene type direction distance location
metrnlb LOC108258724 coding upstream 142148 16844985 ~ 16858335 (+)
epn3b epn3 coding upstream 212381 16774704 ~ 16788102 (+)
mycbpap NA coding upstream 226061 16745847 ~ 16774422 (+)
LOC113537682 NA coding upstream 270167 16704378 ~ 16730316 (+)
LOC113537683 NA coding upstream 274755 16704811 ~ 16725728 (+)
LOC113537674 LOC108258770 coding downstream 16108 17033943 ~ 17059619 (+)
LOC117596164 LOC108258770 coding downstream 44325 17062160 ~ 17069769 (+)
LOC113525652 NA coding downstream 132916 17150751 ~ 17156373 (+)
LOC117596117 NA coding downstream 149233 17167068 ~ 17172146 (+)
LOC113525656 NA coding downstream 204865 17222700 ~ 17224166 (+)
G377440 NA non-coding upstream 4788 16995444 ~ 16995695 (+)
G377340 NA non-coding upstream 141161 16858344 ~ 16859322 (+)
G377333 NA non-coding upstream 148230 16826025 ~ 16852253 (+)
G377271 NA non-coding upstream 317258 16627559 ~ 16683225 (+)
G377299 NA non-coding upstream 337413 16653177 ~ 16663070 (+)
G377452 LOC108258734,LOC108258759,LOC108258743,LOC108258770,LOC108258767 non-coding downstream 17071 17034906 ~ 17067432 (+)
G377456 NA non-coding downstream 35523 17053358 ~ 17082411 (+)
G377499 NA non-coding downstream 90624 17108459 ~ 17108670 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding downstream 164941 17182776 ~ 17202618 (+)
G377569 NA non-coding downstream 298725 17316560 ~ 17316971 (+)
b3gntl1 b3gntl1 other upstream 145467 16822550 ~ 16855016 (+)
G377269 NA other upstream 435967 16561383 ~ 16564516 (+)
G377132 dnajb1 other upstream 655859 16302750 ~ 16344624 (+)
LOC113537689 NA other upstream 682972 16290730 ~ 16317511 (+)
LOC117596135 LOC108258437,LOC108443942 other upstream 760546 16235613 ~ 16239937 (+)
LOC113537672 LOC108258734,LOC108258743 other downstream 78031 17095866 ~ 17107989 (+)
LOC113525655 NA other downstream 139063 17156898 ~ 17175104 (+)
LOC113526395 NA other downstream 543610 17561445 ~ 17569467 (+)
LOC113524903 NA other downstream 965651 17983486 ~ 18005140 (+)
G377747 NA other downstream 1037789 18055624 ~ 18056805 (+)

Expression


Co-expression Network