LOC113537672 (LOC108258734,LOC108258743)


Basic Information

Item Value
gene id LOC113537672
gene name LOC108258734,LOC108258743
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17095866 ~ 17107989 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447229
CAGCCGTTCTGACCTGTAAAACCACCTGCAGTCTGACTGATCCCACATTCATCTGGTACAAAACCAGCCGTGGTTTAACCACAAAGACCACCAAGAGCAATGAAGTCCACCTGCAGCGGGTCAGCAGTGAGGATGCAGGCAGTTACAGCTGTGCTGTAAGAGGATATGAACATCTCCCCTCTCCTGCTCAAACCCTCAGCGTCAGATGTG
>TU447230
cctgcagcagtgatgctaacTCACCTGTGGACAACTACACCTGGTTTAAGGGGAAGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCGAAGATAAGCATTGAGCACAGTGGAGAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTGTAAGTTAAAGCTGAA
>TU447233
AAGGGGACAACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATAAGCATTGAGCACAGTGGAAAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGGATGTTCTGTGTAAGTTAAAGCTGAAGATCTCCTCACAGCCTACAAGAGATAAAACTATAGTAGATTTACTTTAAAGTCTAACTTCC
>XM_034299903.1
ATGGCTTCTCCACTTTACCTGATCTTTTTGTTCATGATCTCAGGAGCTCTTGGGAATAAATGGAGTGTGAAATACAGCCAACCAAATCTCTGTGCTTTAAAAGGATCTACAGTGTTTATGAACGGCACTTACACACACCCAGCACGTCTTAAAGTGAAGAAGGCGTTTTGGACAATAAACCCATTTAAGGGTAAAGAGCCGACTGATCTGCGTAAGGAACCAGGTTACTCAGACAGAGTGGAGTATTTAGGAGATGAACAGAAACACTTCTCCCTCAGACTGAGTGATGTAAAGAAAACAGATGAACACAGGTACTGCTTCAGAatcataataaatgaaaaaagagaaaagttcCTGGGTCATCCTGGAGTTAGACTCACTGTTACAGATCTTCAGGTGATCACTCCTGCAGAAGTGACAGAGGGACAATCAGCCGTTCTGACCTGTAAAACCACCTGCAGTCTGACTGATCCCACATTCATCTGGTACAAAACCAGCCGTGGTTTAACCACAAAGACCACCAAGAGCAATGAAGTCCACCTGCAGCGGGTCAGCAGTGAGGATGCAGGCAGTTACAGCTGTGCTGTAAGAGGATATGAACATCTCCCCTCTCCTGCTCAAACCCTCAGCGTCAGATATCCTCCAAAGAATGTGTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacTCACCTGTGGACAACTACACCTGGTTTAAGGGGAAGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCGAAGATAAGCATTGAGCACAGTGGAGAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTACATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAATTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCGAAGATAAGCATTGAGCACAGTGGAAAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGGATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAACTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCGAAGATCAGCACTGACGACAATGGAGAGTACATGTGCAAGTGCAGTAACGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGAGTCCATCAACTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGAAGAACTACACCTGGTTTAAAGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCGAAGATCAGCACTGACGACAATGGAGAGTACAAGTGCAAGTGCAGTAACGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTGTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCGAAGATCAGCACTCACGACAATGGAGAGTACAAGTGCAAGTGCAGTAACGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAACTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATGAGCATTGAGCACAGTGGAAAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTACATCAGCTCCTCTGGTGAGATAGTGGAGGGCAGTtcaatgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAACGAAAGACCTACAACATCTCGAAGATCAGCACTGACGACAATGGAGAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATGAGCATTGAGCACAGTGGAAAGTACAAGTGCAAGTGCAGTAACGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAACTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATAAGCATTGAGCACAGTGGAAAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTACATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAATTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACATCATCTCCAAGATCAGCACTGAGGACAGTGGAGAGTACAAGTGCAAGTGCAGTAATGAAGTCGGACATCAGGACTCCATTGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAACCCCTCTGGTGAGAGAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccTCCTGTGGAGAACTACACCTGGTTTAAGGGGACAACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATAAGCATTGAGCACAGTGGAAAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGGATGTTCTGTATCCTCCAAAGACCGTCTCAGTGTCCATCAACTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGAAGAACTACACCTGGTTTAAAGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCGAAGATCAGCACTGACGACAATGGAGAGTACAAGTGCAAGTGCAGTAACGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAATGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgccAACCCACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATCAGCACTGACGACAATGGAGAGTACAAGTGCAAGTGCAGTAACGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAACTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATGAGCATTGAGCACAGTGGAAAGTACAAGTGCAGTTGCAGTAATGAAGTCGGATATCAGGACTCTATCAGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTACATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAATTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACATCATCTCCAAGATCAGCACTGAGGACAGTGGAGAGTACAAGTGCAAGTGCAGTAATGAAGTCGGACATCAGGACTCCATTGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAACTCCTCTGGTGAGAGAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccTCCTGTGGAGAACTACACCTGGTTTAAGGGGACAACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATAAGCATTGAGCACAGTGGAAAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAATGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgccAACCCACCTGTGGAGAACTACACCTGGTTTAAGGGGACAACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATCAGCACTGACGACAATGGAGAGTACAAGTGCAAGTGCAGTAACGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGACCGTCTCAGTGTCCATCAACTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATGAGCATTGAGCACAGTGGAAAGTACAAGTGCAGTTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTACATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACAACATCAGTAGGAAAAGGAAAGACCTACAACATCTCGAAGATGAGCACTGAGGACAGTGGAAAGTACAAGTGCAAGTGCAGTAATGAAGTCGGacatcaggactccatcagtgtaACTCTGAATGTTCTGTATCCTCCAAAGAATGTCTCCGTGTCCATCAACTCCTCTGGTGAGATAGTGCagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAACTACACCTGGTTTAAGGGGACGACATCAGTAGGAAAAGGAAAGACCTACAACATCTCCAAGATCAGCACTGACGACAATGGAGAGTACAAGTGCAGTTGCAGTAATGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccTCCTGTGGAGAAGTACACCTGGTTTAAGGAGAAAGAATCACCTGTAGGATCTGGACAGAGTTACAGAGCTCTACAGAGTGGACAGTACTACTGCGAGGCTCAGAATAAACATGGCTCTGAGAGATCAGCTGCAGTGTCCGTCACTTTAAACGGGTTTCAGAGCTTAGGTGTGTACGCAGGTGTTGGggctgttgtgtttgtgtgtatttgtctgATTGTCGCCTTCTTGTTTATAAGgaaaaagaaagcaatTGGTTCAACAGCAGACCAAAGTTCAAAACAGGATAATCTTTATGCCAGTGTAGCAATGACAAATCCAATCAACACTGTACCTGATTCAGCCTCGGCCGATCAGGATGAAGTCCTGTATGCCAGAGTTGTACGCCGGAGTGCCGGTGACCCCGGGAACACTGAGAGTTCTGCTCTGAAAGCTTCTGCCTCTGAGGACAAGGAGGTTCAGTATGCTAGTATTAGATTTACTCACACCGGTGCTGACTACAGGCCTTCCAATGCTGAGGATCCCACTGTGATCTACAGCAGAGTGAATTAATCAACATTCACCCATTTATTCAACCTCACCACAGCTCCCACCTGGTCAGTGGAAAGCTTCTAGAAACTCTCCAGATGTCACAtgagcttttttatttatttattttttttaataccttcTGATGTCTTGATGTGTATATCAGGTGCAACCAAGTGTAACTGGAGAACATTggataactaaaaaaaatatctggacTAAACTGTTAGCTAACATtcacattttgaatatttaaagcCTCAGACccatgagataaatgtaaatgtaaatgtgactcACTGGCGGATCCTAACTCAAAATCCAGTTAGGCCCAATGAAAATATAGCACCTGGTTAAATTCAGCATATCATGATCAACATCACAACATCACCAGACTTTGATAAAACTTCTGCCTGTACATACTGGAAATCTAAAAACGTATTTGTTTTTCGCTTATCGATAGCTAATTTGTAATTcgcaaagtgga

Function

GO: NA

KEGG:

id description
K16680 ED; echinoid

RNA

RNA id representative length rna type GC content exon number start site end site
TU447229 False 210 lncRNA 0.52 1 17097258 17097467
TU447230 False 202 lncRNA 0.45 1 17097681 17097882
TU447233 False 216 lncRNA 0.40 1 17101208 17101423
XM_034299903.1 True 6904 mRNA 0.47 28 17095866 17107989

Neighbor

gene id symbol gene type direction distance location
LOC117596164 LOC108258770 coding upstream 26097 17062160 ~ 17069769 (+)
LOC113537674 LOC108258770 coding upstream 36247 17033943 ~ 17059619 (+)
metrnlb LOC108258724 coding upstream 237531 16844985 ~ 16858335 (+)
epn3b epn3 coding upstream 307764 16774704 ~ 16788102 (+)
mycbpap NA coding upstream 321444 16745847 ~ 16774422 (+)
LOC113525652 NA coding downstream 42762 17150751 ~ 17156373 (+)
LOC117596117 NA coding downstream 59079 17167068 ~ 17172146 (+)
LOC113525656 NA coding downstream 114711 17222700 ~ 17224166 (+)
LOC117596139 LOC108261577 coding downstream 127606 17235595 ~ 17254121 (+)
LOC117596142 LOC108261577 coding downstream 136779 17244768 ~ 17249333 (+)
G377456 NA non-coding upstream 13455 17053358 ~ 17082411 (+)
G377452 LOC108258734,LOC108258759,LOC108258743,LOC108258770,LOC108258767 non-coding upstream 28434 17034906 ~ 17067432 (+)
G377447 NA non-coding upstream 45597 17009446 ~ 17050269 (+)
G377440 NA non-coding upstream 100171 16995444 ~ 16995695 (+)
G377340 NA non-coding upstream 236544 16858344 ~ 16859322 (+)
G377499 NA non-coding downstream 470 17108459 ~ 17108670 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding downstream 74787 17182776 ~ 17202618 (+)
G377569 NA non-coding downstream 208571 17316560 ~ 17316971 (+)
G377604 NA non-coding downstream 307415 17415404 ~ 17427856 (+)
G377644 NA non-coding downstream 466772 17574761 ~ 17585043 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 78031 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 240850 16822550 ~ 16855016 (+)
G377269 NA other upstream 531350 16561383 ~ 16564516 (+)
G377132 dnajb1 other upstream 751242 16302750 ~ 16344624 (+)
LOC113537689 NA other upstream 778355 16290730 ~ 16317511 (+)
LOC113525655 NA other downstream 48909 17156898 ~ 17175104 (+)
LOC113526395 NA other downstream 453456 17561445 ~ 17569467 (+)
LOC113524903 NA other downstream 875497 17983486 ~ 18005140 (+)
G377747 NA other downstream 947635 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 954429 18062418 ~ 18068946 (+)

Expression


Co-expression Network