LOC113525655


Basic Information

Item Value
gene id LOC113525655
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17156898 ~ 17175104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447297
TAGAAGTGTAGACTGTGACATTTACatagagggggagagagagggagggaggaggaagtAAAATACTATTTAGTTCACAGAAAATCATTCTGACAAGATTAAAGCATTATGCAGTAAAGTGAATTGCACCTGCAGCTTGAATTGAACACTCTGCTCGTTCTTATCATCTGTCTTATCCGAGATCACAGTtcctcatcacacactgtgaacacagaTGACTTAAACAACCGACAGcTTGGACATACTGAAGAGGACTATGAGGAGATTAAAGACTACAAATTTCACACAGATCTACACACTATTTACAACAATGTTGACATACCCACTGATCCCTCAGAGTCACCTACTGAGCTTGAACATACTGCAGAGGATTTCGATGAGATTAAAGACACGAAATATCATCCAGAACTATGTAGTGTTAACACCATTACTGAAGCGCCAGCAGATCCCTCAGATCAACCCGCAGATCCGACTGAAAGCCACGAGTACAACACAGTGATCTTCCTGGAGAATTCACACTGCTCTGAACTCGAAACTTCCAGCTCTGTGATACAGGAGATAAATGAGTGATGTCTCTACCTGTCAATCATCTGTCAAGAGTCCTGACTCctgatatttttcattatagAAGATGTGAAGTGTAAATTGTTGTTTCTAAAATATACACAGGTGTGTTAGATACTTATGTTTTACTGTGACTACATTTCATTTGACTGTTTTATAGCAGAAATATGGTACTTTTCATTAGATTATGTTAATGCTTACCTTTATCAATGTGtatcactgttttattttagttgtGTTACTATAGGCTTaattatcataaaaataaataactaaaccCTACATACTACAATACTACATATAATGTGTTATGCTTGAATAAGAGAACTGTTTGCTGGTTTTgttgcatacttttttttttttttacatttttccatgCGTTAATAATAAATGTCGAG
>XM_034299904.1
tcaaCTCTATCCGGCTGTCTGGGTTGTGTTTCATTCTGAAACCCGCTGCGGTTTAAACAGgtttttcttcttctccagcAACATCATGAACATTATAGCTGTGAGTGTGATTCTTTTTGgagccGTACCCAATGTGGTGTCTGGAGGAGTCCGAGTGAAAGGACCACTAGGAGGAAACGCTTCTGTTCACTGTTCATACGACAACGGAAGTGAGAGTTACCCAAAGTACTTCAGTAAAGGTAAACTTAAAACAGAGCTTGTGAGACTGAACAGCAGAGGAATGTGGCCCCAGGACAGCAGATTCTCTCTGGAGGACGATAAGGGGAACAGAGTATTCACTGTCACTATCAGGAACCTGAGTGTGGAGGACGCTGGGCTTTACTGGTGTGGGGTGGACCGGTGGCTGTGGGATTTTCTGACGGAGGTCAACCTCGACGTAGTGCAAGATGTAGCGCAAGATGCAACCAGTGAGAATGCTTTTGTTTCCCAAACTACATCTTCAGCCACCATAACCAGGCAGAGAACCACAGAACCACAGGACCAGCAAACCTTCATTAGAGATAAATCTGTGCATCTTGGAGTCTCTCTGGCTGTAGTTATGCTGCTGTGTGGGACTACAAATGCTATATTCTTCATTATGAAGAACAACAAGGCAAAAGCAGGCGCCTCCACACAGTCTGAAAATTACACAGAACATGATGTGgaCAACTGTATGTACGACAAAATCCTCCCAAAAAACAGCATCTCTTTAGCCACCATCCAGAGCCCAGATTCCACCATCTATGCTACTCCAACATCGAGTCGAACCCGgactctctctcctccatcccACAGCGAACCTGCAGCAATCCAGGGCTGCTCTGGAGAAACCCAACTTCAACATCCTGAAGCAGTGGTGTATTCTGTTGTTCCACGCTCTCCAACCTGTCCACAACCTCAGAGTTATGCACCAATTATCACTTCAACACAATCCGTTTCCCTACTCTATTCCAAATTCTGCTTTCAGCAGCGATCACATGTGCTTAATGACACTTCTTCTTTCCCAGAGGAGTCACATGATGTCTATGCTACTGTCCAGCAGCTGAGCTGGTGTAACCTCACAGAGAAGAGCTGCTCATTCCTCTCCTCCGTTCTCAACACTTTAAGAGAGCTGGACCTGAGTAACAAtgacctgcaggattcaggagtgaagatCATTTCTGATGGACTCAGCAATGAACACTGCAAACTGCAGATACTGAGCTGTACATATCCAGAAGGGcatgaaaatgacatgaaaagTGTGTACAAAGTGACCAGTCAGAGCATATTCGCCATCATATTCACTTATTCAGACTATGAAAACAAAGACAAGTATGTTCTTCACGTCTCCTCGAGAGATAAAGTCATCAATATGAGCATCAGCAATGTGACGGTGGATGATGGAGGACtttatctgtgtggagttttaaagAATAAGCCTTCTTATGTGTCCATCTTCAGTGAAATGCAGCTTGAAGTTACTGCTCCAGCTTCCTCATCggccatcatcatcactgtgtaCGTCGGTGTGGCTCTGCTGCTGATCGCAGGATTTACGCTGATCTTCTACAAACTGTGGTCCACGAAGGCAAAAgGCTCGTTCTTATCATCTGTCTTATCCGAGTTAcagatgtcaaaaaaaaaaaccacaacccTTCCAACCCTTCTTCCAACAACACAGTACACCAAGTAcaccatgacatcatcatcatctttatccCATACATCAgTTCTGTATGTTGGTGCAGGTACCTCTGTGGGCATCATTGTCTCAGTCTCTGTGGTTCTTCTGCTCTTTGCTATTCTTCTCTACTTGTTTCTTAAatggaaacaaaataaacacgATCACAGTtcctcatcacacactgtgaacacagaTGACTTAAACAACCGACAGcTTGGACATACTGAAGAGGACTATGAGGAGATTAAAGACTACAAATTTCACACAGATCTACACACTATTTACAACAATGTTGACATACCCACTGATCCCTCAGAGTCACCTACTGAGCTTGAACATACTGCAGAGGATTTCGATGAGATTAAAGACACGAAATATCATCCAGAACTATGTAGTGTTAACACCATTACTGAAGCGCCAGCAGATCCCTCAGATCAACCCGCAGATCCGACTGAAAGCCACGAGTACAACACAGTGATCTTCCTGGAGAATTCACACTGCTCTGAACTCGAAACTTCCAGCTCTGTGATACAGGAGATAAATGAGTGATGTCTCTACCTGTCAATCATCTGTCAAGAGTCCTGACTCctgatatttttcattatagAAGATGTGAAGTGTAAATTGTTGTTTCTAAAATATACACAGGTGTGTTAGATACTTATGTTTTACTGTGACTACATTTCATTTGACTGTTTTATAGCAGAAATATGGTACTTTTCATTAGATTATGTTAATGCTTACCTTTATCAATGTGtatcactgttttattttagttgtGTTACTATAGGCTTaattatcataaaaataaataactaaaccCTACATACTACAATACTACATATAATGTGTTATGCTTGAATAAGAGAACTGTTTGCTGGTTTTgttgcatacttttttttttttttacatttttccat

Function

GO: NA

KEGG:

id description
K06719 CD300; CD300 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
TU447297 False 962 lncRNA 0.36 4 17172237 17175104
XM_034299904.1 True 2625 mRNA 0.43 16 17156898 17175083

Neighbor

gene id symbol gene type direction distance location
LOC113525652 NA coding upstream 525 17150751 ~ 17156373 (+)
LOC117596164 LOC108258770 coding upstream 87129 17062160 ~ 17069769 (+)
LOC113537674 LOC108258770 coding upstream 97279 17033943 ~ 17059619 (+)
metrnlb LOC108258724 coding upstream 298563 16844985 ~ 16858335 (+)
epn3b epn3 coding upstream 368796 16774704 ~ 16788102 (+)
LOC113525656 NA coding downstream 47596 17222700 ~ 17224166 (+)
LOC117596139 LOC108261577 coding downstream 60491 17235595 ~ 17254121 (+)
LOC117596142 LOC108261577 coding downstream 69664 17244768 ~ 17249333 (+)
LOC113526590 LOC108258777 coding downstream 79973 17255077 ~ 17262224 (+)
LOC113526801 LOC108258761 coding downstream 125838 17300942 ~ 17306270 (+)
G377499 NA non-coding upstream 48228 17108459 ~ 17108670 (+)
G377456 NA non-coding upstream 74487 17053358 ~ 17082411 (+)
G377452 LOC108258734,LOC108258759,LOC108258743,LOC108258770,LOC108258767 non-coding upstream 89466 17034906 ~ 17067432 (+)
G377447 NA non-coding upstream 106629 17009446 ~ 17050269 (+)
G377440 NA non-coding upstream 161203 16995444 ~ 16995695 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding downstream 7672 17182776 ~ 17202618 (+)
G377569 NA non-coding downstream 141456 17316560 ~ 17316971 (+)
G377604 NA non-coding downstream 240300 17415404 ~ 17427856 (+)
G377644 NA non-coding downstream 399657 17574761 ~ 17585043 (+)
G377652 NA non-coding downstream 419984 17595088 ~ 17599934 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 48909 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 139063 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 301882 16822550 ~ 16855016 (+)
G377269 NA other upstream 592382 16561383 ~ 16564516 (+)
G377132 dnajb1 other upstream 812274 16302750 ~ 16344624 (+)
LOC113526395 NA other downstream 386341 17561445 ~ 17569467 (+)
LOC113524903 NA other downstream 808382 17983486 ~ 18005140 (+)
G377747 NA other downstream 880520 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 887314 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 982989 18158093 ~ 18166225 (+)

Expression


Co-expression Network