LOC113526395


Basic Information

Item Value
gene id LOC113526395
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17561445 ~ 17569467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447424
CAAGAGGCAGAATTCCTTGGATATTGGTGGggggaaaatGTTTCTCATTCATCATCACGGTGTGTGCCAGCGTGACACTGCTGCTACTGATTGGAGGATCTGTACTCGTCTACAAGCTGAAAAAACGCAAGACACGAGACTCTGCCTCTATTAGTCAGCGAACAGAAGGAAGTCACACGACTGCTGCTGATTATGAGAATAA
>TU447429
TCAGACTCAGCCTACCAGAGTCTAAACCCAAACACCAACCAATCAGACTCAGCCTACCAGAGTCTAAACCCAAACACCAACCAATCAAACTCAGCCTACCAGAGTCTAAACCCAAACACCAACTAATCAAACTCAGCCTATCAGAGTCTAAACCCAAACACAGTCTCCTCTAATAGACATTGAACCCTACTTGTATAGTCAGCACTAAGCTACTGTACACAGACTAGTTTAATAGGTTTTGCAtaaattttgcttttataaaCTATGTGGGTTTTTCTACTAAATTTTCCtagttaaaatttattttcttgttctgatgtttggagaaaaaaaaaaacttaaattgAGTACTATCTGTACTTCttgtttttccccccaacatCTAATTGTTCAATAAACTCTTCAAAA
>XM_034299907.1
AGTGGATCATCTATATAGTGATATTCAGAAACCTGAGCTTACAGGATGCTGGAATGTATCGATGTGGAGAAACTGGAGTGTGGAATCATGATGTTAACCTGAAAGTGAACAGTGTTTTACAGCATTTTCAGTGGAAGGACCATGAGGTTGAGTAACtcaaacacaacagaaaaaaggaaatattcaaaccagaaATAGCTGGAGGCGGAGACGCACAcgtatatatttcatttcaagGACAAACCCAAATGCACAAATGCTGTAATATTGGTGGAATGTTGTTTTTGTGAAGCTGAAATTCAGTTCAGAATGAagatcctcctcctcatcaccttCTACCTGATCTCAGGTCCAGTGGGCTGCGTTGACGTGCCTGGTTACAAAGGAGGTCGTGTCAAAATCTACTGCATTCCCCAAACTGCTGTgtatttttgcaaatttaaaaCTCAAACTAAGTGCGAGTATCTGATAGAAGCTCAAGAGCAGAACAAATGGATTAATAAGGACAGATTTTCTCTGTATCATTCCACTGGATCACTTACTCTGATATTCAGAAACCTGAGCTTACAGGATGCTGGAATGTATCGGTGTGGAGAGACCAGGGCCATGACATGGAGTCGTGACATTAACCTGAAAGTGAACAGTGATCCATGTTGTAGCGGGACAAGAACAGTAACAGGTTATTTGGGACAGACTGTGACGATCAGATGCTCCTATCCAGTAGAGTTTGAAAAAAACTCTAAGCACTTCTACAAACGGACCGGTGACTATGAACATGAAGTGATCTACACCAATGGAAGAGAACAGTATCAGGATGGCAGATTCTCCATTTCTGATGACAGGAGGAATAAAGTTTTCAGTGTGAACATCAGTGATGTGAGAGAAGATGATGGAGGAGTTTATTTCTGTACAGTTTGGAAAACAGAGGAATCCATTGGTTATTACTCGTTCTTCACAAAAGTTCATCTCCATGTTACTGATGACACAGACAGACCTCAGACTGGTTTCTCATTCATCATCACGGTGTGTGCCAGCGTGACACTGCTGCTACTGATTGGAGGATCTGTACTCGTCTACAAGCTGAAAAAACGCAAGACACGAGACTCTGCCTCTATTAGTCAGCGAACAGAAGGAAGTCACACGACTGCTGCTGATTATGAGAATAAGCTTTCAAACATAATCTACTACTCAGCCAACACCGACCAATCAAAGCCTACCAGAGTCACAATCAGCCTACCAGAGTCTAAACAAAACCTCAGACTCAGCCTACCAGAGTCTAAACCCAAACACCAACCAATCAGACTCAGCCTACCAGAGTCTAAACCCAAACACCAACCAATCAAACTCAGCCTACCAGAGTCTAAACCCAAACACCAACTAATCAAACTCAGCCTATCAGAGTCTAAACCCAAACACAGTCTCCTCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU447424 False 202 lncRNA 0.47 4 17566806 17568970
TU447429 False 408 lncRNA 0.36 1 17569060 17569467
XM_034299907.1 True 1428 mRNA 0.43 8 17561445 17569232

Neighbor

gene id symbol gene type direction distance location
tmed1b LOC108258813,LOC108411617,LOC106593283 coding upstream 3392 17552000 ~ 17558053 (+)
LOC113526467 NA coding upstream 36018 17513585 ~ 17525427 (+)
LOC113526593 LOC108258729,LOC107668682 coding upstream 66634 17451592 ~ 17494811 (+)
LOC113526628 NA coding upstream 120103 17431213 ~ 17441342 (+)
LOC113526484 NA coding upstream 201581 17352959 ~ 17359864 (+)
dnm2b dnm2,dnm2a,dnm2b,LOC108258735,LOC107742527,LOC107571132 coding downstream 19166 17588633 ~ 17612874 (+)
LOC113525128 vav1,LOC107571792 coding downstream 88211 17657678 ~ 17684129 (+)
pin1 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 coding downstream 143904 17713371 ~ 17723802 (+)
LOC113525124 LOC108258806,LOC108258809,LOC108258789,LOC108412240,LOC108413281 coding downstream 156466 17725933 ~ 17728564 (+)
LOC117596147 LOC108258809,LOC108258789,LOC108258806 coding downstream 168648 17738115 ~ 17740854 (+)
G377604 NA non-coding upstream 133589 17415404 ~ 17427856 (+)
G377569 NA non-coding upstream 244474 17316560 ~ 17316971 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding upstream 358827 17182776 ~ 17202618 (+)
G377499 NA non-coding upstream 452775 17108459 ~ 17108670 (+)
G377456 NA non-coding upstream 479034 17053358 ~ 17082411 (+)
G377644 NA non-coding downstream 5294 17574761 ~ 17585043 (+)
G377652 NA non-coding downstream 25621 17595088 ~ 17599934 (+)
LOC117596150 NA non-coding downstream 132201 17701668 ~ 17702743 (+)
G377703 NA non-coding downstream 245064 17814531 ~ 17815106 (+)
G377709 NA non-coding downstream 315571 17885038 ~ 17887303 (+)
LOC113525655 NA other upstream 386341 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 453456 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 543610 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 706429 16822550 ~ 16855016 (+)
G377269 NA other upstream 996929 16561383 ~ 16564516 (+)
LOC113524903 NA other downstream 414019 17983486 ~ 18005140 (+)
G377747 NA other downstream 486157 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 492951 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 588626 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 713527 18282994 ~ 18287310 (+)

Expression


Co-expression Network