G377644


Basic Information

Item Value
gene id G377644
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17574761 ~ 17585043 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447431
TCTTGGGTTTGGTcaaagatttgtttattttctatgtAACATAAAATCCAAAATCAGAAAGGTGCAGTGTTGGGAACATTATTTGGAAGTCTGGATCCAAACTGACGACCAGATGGCACTGATTCAGATAAACTTTTAGCAACATTGAGCTGTGACCCATATAACACTGTAGTGCCACCTAGAGGCCAAACCTGGCTTACTGGCCCCATGTCTCCAGGTTTACTAAAGTAACATTTGAAGCAGTCAGCAAACATTGACATCACCAACCACCAATCAGAAACTGAGTAGTCACTAATTTTCATTGTAAATCATCACATGCATGAATTTCATCAACTATCATTTCTGGATATTGCTTACAAATAGTGCAGAAATCATTATTTACTCCAGACATTCTTTTTATCCCACTTCTATAACATCTGTATTCATACCACAACCCTCATACATTAGGTGTGATTCAggtgtttttgtttgaatttcttGTGTTTCTGATTAACTTCaatgaaaaactaaataaattctCATAAAACTGCTGagtaaaaaacacattatacagCAGACTAGCTTATTAACAACTGGcttattaacaacaaaaaactaaacGCACACAATGTTCCGTTCACCTGctccaaatgtagtcaatcagctGAGTCTGATTGGATGAGTAAAGTTACAGTGTATAGCACAaaagctacaaggctaatataCCAAACAAAACTCTCTCTTAGACCTTTGCTTGAAGTGAGACTTCCTGTCATCTACAAACATGCACTAAACTCTTCAGTGAAGCTGAACACCAGCGCATGATTGATAGGGGCCTCCATCTTGTATAATCAGACTCACTTTTTCCATTAGCGCAATAAAAAATTCATACTGCTGATATGGAGTGACACCAAACTCTGTGCTGAGAAAAACAGGAACTCAGGTTCTAGATGGAGCTACAGTTCTTTCTCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU447431 True 953 lncRNA 0.37 2 17574761 17585043

Neighbor

gene id symbol gene type direction distance location
tmed1b LOC108258813,LOC108411617,LOC106593283 coding upstream 16708 17552000 ~ 17558053 (+)
LOC113526467 NA coding upstream 49334 17513585 ~ 17525427 (+)
LOC113526593 LOC108258729,LOC107668682 coding upstream 79950 17451592 ~ 17494811 (+)
LOC113526628 NA coding upstream 133419 17431213 ~ 17441342 (+)
LOC113526484 NA coding upstream 214897 17352959 ~ 17359864 (+)
dnm2b dnm2,dnm2a,dnm2b,LOC108258735,LOC107742527,LOC107571132 coding downstream 3590 17588633 ~ 17612874 (+)
LOC113525128 vav1,LOC107571792 coding downstream 72635 17657678 ~ 17684129 (+)
pin1 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 coding downstream 128328 17713371 ~ 17723802 (+)
LOC113525124 LOC108258806,LOC108258809,LOC108258789,LOC108412240,LOC108413281 coding downstream 140890 17725933 ~ 17728564 (+)
LOC117596147 LOC108258809,LOC108258789,LOC108258806 coding downstream 153072 17738115 ~ 17740854 (+)
G377604 NA non-coding upstream 146905 17415404 ~ 17427856 (+)
G377569 NA non-coding upstream 257790 17316560 ~ 17316971 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding upstream 372143 17182776 ~ 17202618 (+)
G377499 NA non-coding upstream 466091 17108459 ~ 17108670 (+)
G377456 NA non-coding upstream 492350 17053358 ~ 17082411 (+)
G377652 NA non-coding downstream 10045 17595088 ~ 17599934 (+)
LOC117596150 NA non-coding downstream 116625 17701668 ~ 17702743 (+)
G377703 NA non-coding downstream 229488 17814531 ~ 17815106 (+)
G377709 NA non-coding downstream 299995 17885038 ~ 17887303 (+)
G377715 LOC108258746,LOC108413117,LOC107662713,LOC107560581,LOC107758383,LOC105903165 non-coding downstream 353224 17938267 ~ 17942279 (+)
LOC113526395 NA other upstream 5294 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 399657 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 466772 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 556926 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 719745 16822550 ~ 16855016 (+)
LOC113524903 NA other downstream 398443 17983486 ~ 18005140 (+)
G377747 NA other downstream 470581 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 477375 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 573050 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 697951 18282994 ~ 18287310 (+)

Expression


Co-expression Network