G377703


Basic Information

Item Value
gene id G377703
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17814531 ~ 17815106 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447503
tgacactgtatatatttatacagtgtCAGGTTGTGGACACTGTATTCTGCCTTTTGGCCACCAGATGGCGACTCTGAGGACTTTCTATTAGGCCTATCGCCTAGTTAATGTGTCTCACCTGTTTCTTGTTTATCCTGTGTATTTAAGTTGCCCTTCCTGTGTTAGTCTTTGCTTAGTCTTTGCCTTGGTCCTTGCTGTATGTAAGTCTCTGCCTTGCTTTCTTGGATTACTGTGCTTTCTGTGAATTATTGAAATTTTTGTGAGTTTTGGTATGTTTTGAAAGTTGTGACTAAGAATTTTTGCCTTGGAATTTTTTTGGTTCTTATTGCTTTGATTCACTGCCATTGATAAAATGAAGAGCCTTGCTGAGAAACTTTGAAACTTTTTGTGAACTCCTTCAATTAAACTACTTAACCGTACTCCAGTGCCGGCCTCTGCTTTTGGGTCCTCATCCTGTGTGTAGCTCAACCAGTAGAGTATTGGACTTAGAATCCAGAGACCTTAGTTCAATACCTGCTCTGAATGTGATAGAAAGACTGAGCTAAAGACATGGACCCAGCAGAGGAAAGAAACTCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU447503 True 576 lncRNA 0.40 1 17814531 17815106

Neighbor

gene id symbol gene type direction distance location
LOC117596141 LOC108258810 coding upstream 1234 17809632 ~ 17813297 (+)
LOC117596140 LOC108258810 coding upstream 9010 17801617 ~ 17805521 (+)
LOC113525123 LOC108258810 coding upstream 19872 17789523 ~ 17794659 (+)
LOC117596145 LOC108258809,LOC108258789,LOC108258806,LOC108412240 coding upstream 34445 17776852 ~ 17780086 (+)
LOC117596146 LOC108258789,LOC108258806,LOC108258809,LOC108413281 coding upstream 41166 17764286 ~ 17773365 (+)
LOC113524912 LOC108258795,LOC108258794,LOC108258797 coding downstream 34361 17849467 ~ 17869038 (+)
LOC113524898 LOC108258795,LOC108258794,LOC108258797 coding downstream 63979 17879085 ~ 17882173 (+)
LOC113524900 LOC108258808 coding downstream 74991 17890097 ~ 17893856 (+)
LOC113524915 LOC108258795,LOC108258797 coding downstream 83737 17898843 ~ 17904082 (+)
LOC113524906 NA coding downstream 97283 17912389 ~ 17916263 (+)
LOC117596150 NA non-coding upstream 111788 17701668 ~ 17702743 (+)
G377652 NA non-coding upstream 214597 17595088 ~ 17599934 (+)
G377644 NA non-coding upstream 229488 17574761 ~ 17585043 (+)
G377604 NA non-coding upstream 386675 17415404 ~ 17427856 (+)
G377569 NA non-coding upstream 497560 17316560 ~ 17316971 (+)
G377709 NA non-coding downstream 69932 17885038 ~ 17887303 (+)
G377715 LOC108258746,LOC108413117,LOC107662713,LOC107560581,LOC107758383,LOC105903165 non-coding downstream 123161 17938267 ~ 17942279 (+)
G377723 NA non-coding downstream 142140 17957246 ~ 17957480 (+)
G377727 NA non-coding downstream 152112 17967218 ~ 17968950 (+)
G377738 NA non-coding downstream 192577 18007683 ~ 18008164 (+)
LOC113526395 NA other upstream 245064 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 639427 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 706542 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 796696 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 959515 16822550 ~ 16855016 (+)
LOC113524903 NA other downstream 168380 17983486 ~ 18005140 (+)
G377747 NA other downstream 240518 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 247312 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 342987 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 467888 18282994 ~ 18287310 (+)

Expression


Co-expression Network