G377727


Basic Information

Item Value
gene id G377727
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17967218 ~ 17968950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447558
CTCATCACAcggtgtagatacacacactcatcacacggtgtagatacgcactcatcacacagtgtagatacacacactcatcacacagtgtagacacacactcatcacacggtgtagatacacacactcatcacacggtgtagatacacactcatcacacggtgtacatacacacactcatcacacggtgTAGACACgcactcatcacacagtgtagatacacactcatcacacggtgtacatacacacactcatcacacggtgTAGATACGCACTCATCACACGatgtagatacacacactcatcacacggtgtagatacgcactcatcacacagtgtagatacacacactcatcacacggtgtacatacacacactcatcacacggtgtagatacacactcatcacacggtgTAGATACGCACTCATCACACGATGTAGATACGCACTCATCACACGGTGTagatacacactcatcacacagtgtagatacgcactcatcacacggtgtacatacacacactcatcacacagtgtagatacgcactcatcacacggtgtacatacacacactcatcacacgaTGTAGATACGCACTCATCACACGGTGTAGATAGgcactcatcacacagtgtagatacgcactcatcacacggtgtacatacacacactcatcacacagtgtagatacgcactcatcacacggtgtacatacacacactcatcacagtGTAGATACGCACTCATCACAcggtgtacatacacacactcatcacacagtgtagatacacactcatcacacagtgtagatacacactcatcacacagtgtagatacacacactcatcacacggtgtagatacgcactcatcacacagtgtagatacacactcatcacacagtgtagatacacacactcatcacacagtgtagatacacactcatcacacagtgtagatacacacactcatcacacggtgtagatacgcactcatcacacagtgtagatacacacactcatcacgcggtgtagacacacactcatcacacggtgtagatacacacactcatcacacggtgtagatacacacactcatcacacggtgtagatacacactcatcacacgaTGTAGACATgcactcatcacacagtgtagatacacactcatcacacgaTGTAGACACAGACTCATCACAGTCATCACACGGTGTAGATACgcactcatcacacagtgtagatacgcactcatcacacagtgtagacacacactcatcacacggtgtagatacacacactcatcacacggtgtagacacacactcatcacacggtgtagacacacactcatcacacagtgtagataCGCACTCATCACA

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU447558 True 1376 lncRNA 0.46 2 17967218 17968950

Neighbor

gene id symbol gene type direction distance location
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding upstream 15040 17941545 ~ 17952178 (+)
LOC113524905 gpr108,LOC108413117 coding upstream 24884 17919058 ~ 17942334 (+)
LOC113524906 NA coding upstream 50955 17912389 ~ 17916263 (+)
LOC113524915 LOC108258795,LOC108258797 coding upstream 63136 17898843 ~ 17904082 (+)
LOC113524900 LOC108258808 coding upstream 73362 17890097 ~ 17893856 (+)
trnak-uuu_20 NA coding downstream 150715 18119665 ~ 18119737 (+)
LOC113524897 LOC108258756 coding downstream 203680 18172630 ~ 18175771 (+)
parn parn,LOC108258427 coding downstream 324808 18293758 ~ 18309052 (+)
LOC113524838 bfar coding downstream 400094 18369044 ~ 18375405 (+)
LOC117596190 gtf3c1 coding downstream 416977 18385927 ~ 18390650 (+)
G377723 NA non-coding upstream 9738 17957246 ~ 17957480 (+)
G377715 LOC108258746,LOC108413117,LOC107662713,LOC107560581,LOC107758383,LOC105903165 non-coding upstream 24939 17938267 ~ 17942279 (+)
G377709 NA non-coding upstream 79915 17885038 ~ 17887303 (+)
G377703 NA non-coding upstream 152112 17814531 ~ 17815106 (+)
LOC117596150 NA non-coding upstream 264475 17701668 ~ 17702743 (+)
G377738 NA non-coding downstream 38733 18007683 ~ 18008164 (+)
G377739 NA non-coding downstream 39997 18008947 ~ 18009156 (+)
G377742 NA non-coding downstream 40936 18009886 ~ 18048292 (+)
G377751 LOC108258779 non-coding downstream 65139 18034089 ~ 18049869 (+)
G377752 NA non-coding downstream 72730 18041680 ~ 18042301 (+)
LOC113526395 NA other upstream 397751 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 792114 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 859229 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 949383 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 1112202 16822550 ~ 16855016 (+)
LOC113524903 NA other downstream 14536 17983486 ~ 18005140 (+)
G377747 NA other downstream 86674 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 93468 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 189143 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 314044 18282994 ~ 18287310 (+)

Expression


Co-expression Network