G377751 (LOC108258779)


Basic Information

Item Value
gene id G377751
gene name LOC108258779
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18034089 ~ 18049869 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447586
GGAACCACTGGTACACTGTGAGTTTAGCAGTCCAGGGCCCGGTGTGGAACATCAGGTGCAAGTAGGCAATCCCAGCAAACAGGTCAGCTGCCGCCAGGTTCCCCAGCAGGTAGTAGATGGGGTAATGGAAGCGTCGGTTTATAAAGATGGCTGACATGACCAGAATGTTAGCCGCAATGACGAAACAGGCCACGGTCAGTCCCAGAGTCACCACGGCATAATCCTTTGGGCGAAACTCGTCCGAGATAACCTTCCCCGTCAGGTTGTAGTAATCCGGGACTGAATAATTGGGGCATGTTTTGGAAGCGGCTACTGCTGCCATGGTGACAGTGGTCATGTTGGATTTCACTTTCCCAAGGACGGGCGAGGCAAGGATCGAGGAGGGAAGGTGGTGTGTGATTGGCTGGGTGTGGGGTTTGTGGTGTGTTGATTGGCACGCCAATTAGGTGAAAGGGATGATGGGTAATGGAGTGGTGAGAGGCATGGAGCTTCAGGTCACACAGTTCGTCTCTGATAAAACCAAACAAAGCAGACACTCTTCTCGCCtgtgtgtgttcacctgtgcTCACACCCCATCACTTCCGGGGttaggaaagaaaataaataaataaaaaagttcacTTTTCggatagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtctcaggTTACCTGAGATGCAGGAAGTGAAGTTTGTGCGCGCAGTTCAGGGTGCggcacttttctttctttattaccATCAGCatgcgcgcgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU447586 True 773 lncRNA 0.51 2 18034089 18049869

Neighbor

gene id symbol gene type direction distance location
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding upstream 81911 17941545 ~ 17952178 (+)
LOC113524905 gpr108,LOC108413117 coding upstream 91755 17919058 ~ 17942334 (+)
LOC113524906 NA coding upstream 117826 17912389 ~ 17916263 (+)
LOC113524915 LOC108258795,LOC108258797 coding upstream 130007 17898843 ~ 17904082 (+)
LOC113524900 LOC108258808 coding upstream 140233 17890097 ~ 17893856 (+)
trnak-uuu_20 NA coding downstream 69796 18119665 ~ 18119737 (+)
LOC113524897 LOC108258756 coding downstream 122761 18172630 ~ 18175771 (+)
parn parn,LOC108258427 coding downstream 243889 18293758 ~ 18309052 (+)
LOC113524838 bfar coding downstream 319175 18369044 ~ 18375405 (+)
LOC117596190 gtf3c1 coding downstream 336058 18385927 ~ 18390650 (+)
G377739 NA non-coding upstream 24933 18008947 ~ 18009156 (+)
G377738 NA non-coding upstream 25925 18007683 ~ 18008164 (+)
G377727 NA non-coding upstream 65139 17967218 ~ 17968950 (+)
G377723 NA non-coding upstream 76609 17957246 ~ 17957480 (+)
G377715 LOC108258746,LOC108413117,LOC107662713,LOC107560581,LOC107758383,LOC105903165 non-coding upstream 91810 17938267 ~ 17942279 (+)
G377756 NA non-coding downstream 7592 18057461 ~ 18058021 (+)
G377757 NA non-coding downstream 23610 18073479 ~ 18074504 (+)
G377759 NA non-coding downstream 25003 18074872 ~ 18076339 (+)
G377770 NA non-coding downstream 60225 18110094 ~ 18110393 (+)
G377813 NA non-coding downstream 154775 18204644 ~ 18206620 (+)
LOC113524903 NA other upstream 28949 17983486 ~ 18005140 (+)
LOC113526395 NA other upstream 464622 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 858985 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 926100 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 1016254 17000483 ~ 17017835 (+)
G377747 NA other downstream 5755 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 12549 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 108224 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 233125 18282994 ~ 18287310 (+)
txndc11 txndc11 other downstream 332454 18382323 ~ 18549969 (+)

Expression


Co-expression Network