Gene
RNA
| Item | Value |
|---|---|
| gene id | G377756 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 18057461 ~ 18058021 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU447591 | True | 430 | lncRNA | 0.46 | 2 | 18057461 | 18058021 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| soul5l | LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 | coding | upstream | 105283 | 17941545 ~ 17952178 (+) |
| LOC113524905 | gpr108,LOC108413117 | coding | upstream | 115127 | 17919058 ~ 17942334 (+) |
| LOC113524906 | NA | coding | upstream | 141198 | 17912389 ~ 17916263 (+) |
| LOC113524915 | LOC108258795,LOC108258797 | coding | upstream | 153379 | 17898843 ~ 17904082 (+) |
| LOC113524900 | LOC108258808 | coding | upstream | 163605 | 17890097 ~ 17893856 (+) |
| trnak-uuu_20 | NA | coding | downstream | 61644 | 18119665 ~ 18119737 (+) |
| LOC113524897 | LOC108258756 | coding | downstream | 114609 | 18172630 ~ 18175771 (+) |
| parn | parn,LOC108258427 | coding | downstream | 235737 | 18293758 ~ 18309052 (+) |
| LOC113524838 | bfar | coding | downstream | 311023 | 18369044 ~ 18375405 (+) |
| LOC117596190 | gtf3c1 | coding | downstream | 327906 | 18385927 ~ 18390650 (+) |
| G377751 | LOC108258779 | non-coding | upstream | 7592 | 18034089 ~ 18049869 (+) |
| G377742 | NA | non-coding | upstream | 9169 | 18009886 ~ 18048292 (+) |
| G377752 | NA | non-coding | upstream | 15160 | 18041680 ~ 18042301 (+) |
| G377739 | NA | non-coding | upstream | 48305 | 18008947 ~ 18009156 (+) |
| G377738 | NA | non-coding | upstream | 49297 | 18007683 ~ 18008164 (+) |
| G377757 | NA | non-coding | downstream | 15458 | 18073479 ~ 18074504 (+) |
| G377759 | NA | non-coding | downstream | 16851 | 18074872 ~ 18076339 (+) |
| G377770 | NA | non-coding | downstream | 52073 | 18110094 ~ 18110393 (+) |
| G377813 | NA | non-coding | downstream | 146623 | 18204644 ~ 18206620 (+) |
| G378114 | NA | non-coding | downstream | 254013 | 18312034 ~ 18313352 (+) |
| G377747 | NA | other | upstream | 656 | 18055624 ~ 18056805 (+) |
| LOC113524903 | NA | other | upstream | 52321 | 17983486 ~ 18005140 (+) |
| LOC113526395 | NA | other | upstream | 487994 | 17561445 ~ 17569467 (+) |
| LOC113525655 | NA | other | upstream | 882357 | 17156898 ~ 17175104 (+) |
| LOC113537672 | LOC108258734,LOC108258743 | other | upstream | 949472 | 17095866 ~ 17107989 (+) |
| G377748 | LOC108258742 | other | downstream | 4397 | 18062418 ~ 18068946 (+) |
| rdh8b | LOC108258824,LOC108258753 | other | downstream | 100072 | 18158093 ~ 18166225 (+) |
| G378105 | LOC108258757 | other | downstream | 224973 | 18282994 ~ 18287310 (+) |
| txndc11 | txndc11 | other | downstream | 324302 | 18382323 ~ 18549969 (+) |
| G378160 | NA | other | downstream | 436819 | 18494840 ~ 18496043 (+) |
