G377759


Basic Information

Item Value
gene id G377759
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18074872 ~ 18076339 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447595
gaggggtgccaagacttttgcacagtactgtaaatgaGAACATTAATATCAAAACCTTTATATCCCTCCATCAGCATTTTCTATTAAAGCAAAAAGTTACATCAGGCAGCAAAATCCATGAACTCGGGGTGCGTTTAGTTTTTCCTTCAGCTACAACTTCAGCACTAAGTGTCACTGTGAATGACGTCCGGACATCCCTGATATACAGAAATAGACGCTAACATTGCTAACTTTGGCCAGCTAAACTGATTTATTAGTGTTTACGTCTctgctttttcatttaaaattaatgtttagtGTCAGGTTAATGATTTAGTCACTATGTGCGTAACACGCGAAACAATATCGAGCATCAATGTCCTCATTACTACGTAAGAGTTTATTTTACTATACGCTAAAatactcatttctgattggccagctgGTGGTTGTGTGTTACTCTGTTACACTGAAATGCCTTTAATGCATAAATCAACAACCACAAATAACAGTTTAGCGGATAATTAAACAGACTTTTGCTTCATTAATGAAACTAATATTCGTTCATTTTTTATAGAATTATGAAAAACACTGCATCGCAGCCTCAGTGCATCATGGTCCTGTGGGGTTGTGATTAGATCATTTAAAtatatcttctttttttcctcttaaagaTTTTTCCCACATTCATGTggttaaatataaacctgtaggATTGGAAATTGCCAATCTGGCAACTGTAATGGACATTTATTcaatataaatgattaaaaatgaccATTTGCAGGACGGATCCTGAAAACACCCCAAAACTCAACGGGCCTGTAGTTGGttctaaaatataatgtaatgagtaatatgtaATATGTTAATGTAATAGTGCGCCTCGTCGTAATATCGGAAACTTTAGCGTTAACTTTAACAGCATCTGCACAGGCAGCGTTTTTAAGCACCATTAAAACTCTGTTTTTCTTCATCCTTGGAGACGGAAATCCCACaattcacttcactttactaaCATGGCGAATAAAACCATCACTCTGTCTGAGGAAATCTTCTGATAAACTCTTAACATGAGCATAATTAATTCACTGGGTGATTAGCATAACTAGTTCACACATTCATGTTGCATTACTGAGTGTTAATGAGGACTGATTAGTGCACTGATTAGCGCACTGATTAGCGCACTGATTAGCGCACTGATTAGCGCACTGATTAGCGCACATGACGAGCACACGGTAACAGACTTTGGTCATCATTAGCAACGTTGGTCGCTTAGGAGAAAGTTTGCTTAACGTTtgatattaatgaaaataaataaaaaggtggAGTCAAGTGAAATCGGTGGGCGGAGTTTAAGAGTGATGTCACCTAGGAGCGGGGTCTCGTGGTCACCTGTTCTTCCACCGTGAACGTGTAGTTATACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU447595 True 1406 lncRNA 0.38 2 18074872 18076339

Neighbor

gene id symbol gene type direction distance location
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding upstream 122694 17941545 ~ 17952178 (+)
LOC113524905 gpr108,LOC108413117 coding upstream 132538 17919058 ~ 17942334 (+)
LOC113524906 NA coding upstream 158609 17912389 ~ 17916263 (+)
LOC113524915 LOC108258795,LOC108258797 coding upstream 170790 17898843 ~ 17904082 (+)
LOC113524900 LOC108258808 coding upstream 181016 17890097 ~ 17893856 (+)
trnak-uuu_20 NA coding downstream 43326 18119665 ~ 18119737 (+)
LOC113524897 LOC108258756 coding downstream 96291 18172630 ~ 18175771 (+)
parn parn,LOC108258427 coding downstream 217419 18293758 ~ 18309052 (+)
LOC113524838 bfar coding downstream 292705 18369044 ~ 18375405 (+)
LOC117596190 gtf3c1 coding downstream 309588 18385927 ~ 18390650 (+)
G377757 NA non-coding upstream 368 18073479 ~ 18074504 (+)
G377756 NA non-coding upstream 16851 18057461 ~ 18058021 (+)
G377751 LOC108258779 non-coding upstream 25003 18034089 ~ 18049869 (+)
G377742 NA non-coding upstream 26580 18009886 ~ 18048292 (+)
G377752 NA non-coding upstream 32571 18041680 ~ 18042301 (+)
G377770 NA non-coding downstream 33755 18110094 ~ 18110393 (+)
G377813 NA non-coding downstream 128305 18204644 ~ 18206620 (+)
G378114 NA non-coding downstream 235695 18312034 ~ 18313352 (+)
G378129 NA non-coding downstream 251432 18327771 ~ 18328173 (+)
G378136 NA non-coding downstream 265894 18342233 ~ 18351811 (+)
G377748 LOC108258742 other upstream 5926 18062418 ~ 18068946 (+)
G377747 NA other upstream 18067 18055624 ~ 18056805 (+)
LOC113524903 NA other upstream 69732 17983486 ~ 18005140 (+)
LOC113526395 NA other upstream 505405 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 899768 17156898 ~ 17175104 (+)
rdh8b LOC108258824,LOC108258753 other downstream 81754 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 206655 18282994 ~ 18287310 (+)
txndc11 txndc11 other downstream 305984 18382323 ~ 18549969 (+)
G378160 NA other downstream 418501 18494840 ~ 18496043 (+)
cdc37 cdc37 other downstream 526228 18602567 ~ 18609984 (+)

Expression


Co-expression Network