LOC113525650 (LOC108258801)


Basic Information

Item Value
gene id LOC113525650
gene name LOC108258801
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17176782 ~ 17194992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU447682
GCTCAAAAGTGGAAGTGGACGCAGTGTTACTTTCTACTTCCACCCACAAACAGACACTTCACAGTCACAAAGGCAGAGACCGTGAGAGCGTGTAACATAACCAAcagaacatttattatttttattttctgaagtgaTGTTTGTGAGTCTGGATTTAGAATGAAGATCTTCCTCATCTTCACCTTCTGCCTGATTATAGCTGATACTGATGCTGTAACTACAGTAACTGGACACAGAGGAAGATCAGTTCAGATTAAATGCTCCTACGAATCTGGatatgaagaatacaaaaaGTACCTCTGCAGAGGTGATTGTTCCATTTGGCCTGGAAGCAAAGACATTCCTGTTGAATCTggatctgctgctaaagacACCAGATTCTCTCTGTATGACGACACAACAGCCAAAGTCTTCACCGTCACCATCACTGATCTGAGACCAGAGGATGAAGGCACTTACTGGTGTGCGATAGAGCGGACATTGCTTGATATTTACAGAGAGATTCTATTGAAGGTGAAAACGG
>XM_034300305.1
CAGTGAGGGTGTGTAAGATAACttacagaacatttttattactattttctGAAGTGGAGAGTCTGGAGCATGAAGATCCTCCTCACCTTCTGCCTGATTATAGTTGGTACTGATGCTGTAACTACAGTAACTGGACACAGAGGAAGATCAGTTCAGATTAAATGCCCCTACAAATCTGGATATGAAGATTACAAAAAGTATCTCTGCAGAGGTAAATGTCCCACTGTGGGGTATAAAGACATTCCTGTTCGCTctggatctgctgctaaagacACCAGATTCTCTCTGTATGACGACACAACAGCCAAAGTCTTCACCGTCACCATCACTGATCTGAGACCAGAGGATGAAGGCACTTACTGGTGTGCGATAGAGCGGACATTGCTTGATATTTACAGAGAGATTCTATTGAAGGTGAAAACGGATGATCCTGTCATCAGTACTgtctcacactccacacacaccacacactctgCTTCAGCCCACTTCATGAGTCCATCAGTGCATGCTGAGAGCACATATTCAACAGCAGAATTTCCAACTTTCATGGTCATCATTGTTGTGTCTGTGGTTCTAGTGCTACTTCTCATTGCGCTTTCATTTGCTGTAACTCtacagaggaaaaagaagacCCAAGCCTCATCTCCAGCCCATTCTCCACAATGCTCCTCAAACAATCGTGTGATTTCACCTCCAGAAAGCAGATGCCTTTCTAACACACTTTATTCCACTGCTcaattacccacaatccccccTGACTTTTCCCAGTCTATTTACTCCAACACTGGATTACCCACAGATCCATCTGTTTATTCACAAAGCATTTATGCTTCAGTACAACGCCCATCAGATTCTCCTGATCAGGACATCTACTCCACAGCTCAGTTACCCACaattctctctgactcatcagCCAGTGCTGCTCAGCCGTTGGTTGTGAAATCTGGTGAAAGCCCAACGTACGCAGCAGTGAGTATTGACTCCGGTTCTAATGGTGCAGCTGTAACAGTGATCTTCAAGAACGAGAGCAGCTCATGTGACTATGCTATTGTTAACGTTACTTAATGTGGCTAGTTTTCGTACATCATAGTGCTAATCATTCTGAGTTATTTGTAATTCGTAGCACCCGTTATATTAccttaaaccacagtgctgtttagttctcaaatctgattagtctgaaggtgttgattaattttccataacagcagtcctgacaatagtgcaacag

Function

GO: NA

KEGG:

id description
K20395 CD300B_D_F; CO300B/D/F antigen

RNA

RNA id representative length rna type GC content exon number start site end site
TU447682 False 523 TUCP 0.42 3 17182732 17194992
XM_034300305.1 True 1231 mRNA 0.43 6 17176782 17185069

Neighbor

gene id symbol gene type direction distance location
LOC113525649 NA coding downstream 31391 17131937 ~ 17145391 (-)
LOC113537557 NA coding downstream 57884 17109153 ~ 17118898 (-)
LOC113537677 NA coding downstream 186766 16975606 ~ 16990016 (-)
LOC113537678 NA coding downstream 221598 16948813 ~ 16955184 (-)
LOC113537424 NA coding downstream 227983 16943116 ~ 16948799 (-)
LOC113525654 LOC108258812 coding upstream 20254 17215246 ~ 17222564 (-)
nxnl1 nxnl1 coding upstream 79450 17274442 ~ 17279093 (-)
colgalt1b colgalt1,si:ch211-114l13.7,LOC107690635,LOC107713788,LOC102311502,LOC100712117 coding upstream 86572 17281564 ~ 17298227 (-)
LOC117596143 NA coding upstream 122710 17317702 ~ 17322146 (-)
LOC113526483 NA coding upstream 145516 17340508 ~ 17345865 (-)
LOC117596165 NA non-coding downstream 98621 17068536 ~ 17078161 (-)
G377474 NA non-coding downstream 124517 17032903 ~ 17052265 (-)
G377441 NA non-coding downstream 181133 16995398 ~ 16995649 (-)
G377422 LOC108258724 non-coding downstream 318073 16856779 ~ 16858709 (-)
G377359 NA non-coding downstream 569235 16606330 ~ 16607547 (-)
G377847 LOC108261577,LOC108258774 non-coding upstream 46843 17241835 ~ 17253715 (-)
G377874 NA non-coding upstream 121559 17316551 ~ 17316980 (-)
G377877 NA non-coding upstream 125659 17320651 ~ 17337648 (-)
G377892 NA non-coding upstream 186189 17381181 ~ 17381602 (-)
G377916 LOC107560572,LOC107668682,LOC108258729,LOC107571118,LOC107662698,LOC108413141,LOC101884937 non-coding upstream 273963 17468955 ~ 17560120 (-)
G377416 LOC108258724 other downstream 325119 16845012 ~ 16851663 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other downstream 434793 16621167 ~ 16741989 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other downstream 593645 16566253 ~ 16583137 (-)
LOC113537389 NA other downstream 701351 16421261 ~ 16475431 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other downstream 955167 16216750 ~ 16221615 (-)
G377862 NA other upstream 71237 17266229 ~ 17268030 (-)
LOC113526761 NA other upstream 138304 17333296 ~ 17338806 (-)
ubl5 ubl5 other upstream 512976 17707968 ~ 17712629 (-)
G377994 LOC108258810 other upstream 598694 17793686 ~ 17814445 (-)
LOC113524896 LOC108258753 other upstream 968554 18163546 ~ 18166960 (-)

Expression


Co-expression Network