G378118


Basic Information

Item Value
gene id G378118
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18358478 ~ 18360907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448053
GCTCCCGTCGGCCATCTTTGATGAGGCGCTGAAATGACCTCCAGCGGAGTGTTCTCTCCGTCCAGCACGTCTCTCTGTCTTGTCCTCCTCTCATGTCTCCGCTcgtccttttttctttttgttttgcttttttcctttctttcggTGCATGACAGCATGTGAGAGCGTGatccccccccacacacacccctcgCTATGGCGGCACTATTAACGGGATTTGGTTTGGTatcattcatttccatttctctttttgtgtcCTTAGCGTCCAGGCTAACGTCTGATGATCAAACACACGCttctgaaaaaggaaaaagcgcTTTCGTGTCGCGGCGGTGTCACGTCGAGTCCTCGCACGTTGTCGGACGGTGGACGCCAGCTGCCGTACAACTACAATCTGTCCCGCTCtttactcatcacacactccgaCAGGACGAACGGTTTCTATTAACGACTCAGTCGAAGTACGATTACCGCCACTCTGCTAATGCTTAGCACGCTAAATCTACTTGACTTGCGCCATTTGATGGAGGCGGGCAAATACGGCCACCCCTCTCTGCTAATTATAATATGAGGAGGTGCACACCCTCCATAACTGtagttcatcatcatcatcatgactacactacccataattCCTCCTGTAGAGCTGTAAAAGAAGGTTATAACAGTGTGGCTCAGAAGTAAAAACGTGCTTATTACTATGTAATTATCATCcaaagttcattttaaaaagatttcttCATCTGAACCAGATAAAACTCCTCGATAAAGAGGGAATAAAGTAAATACTGGGTGCAGgggcgtgtgtttgtgttggacAGTGTAACAAGCTGCCATCCTGAGAACCAAACACGCAtatgtgggcggagctacaaacactgcacatcactgattggtcaaacacaATCGTTAAAGAATCAGCAGGTGTTCACATGagtccaaaaaaaacccaaaaaaacaatgAGATGCATGAGTCTGAGATCTTCAGTCATGTGGGATAACATTCCCATCAAATACAACAGAAAACACGCAACGTTCCAATATACTGTCAACAAAAGTGCTGCGTAGGAAATGATGTCACCAAACCCCACCCACCAGAGAAACCCCACCCACTTTCCTGGGCTGTGGAGGCTTGTTCGATGGGAAACAAACACTTGGCTGCTCACAGAGCGTCTGAGAGCttctgtacacttttctggcccgGAGATTCAGAATGCTGGaggctgcaatctgattggctcttcaCATTCCCATGTTTACACACTTCTGCGTATTTCTGCGTTTCTCTGTCTCCACTTGACGTAACAGTTTATGACGTGCTAACGTCACCTTGTACATGGAGACTATTGCTAGATCGTTTCCGTGGTAAccgttttaaacattttcaccGAGTCAGAGTTTATATGTTACTTTATGAGCATTTATGAGTGTTTATGAGCATCCTTACACAAAATGGTTTTTTTTCgtatttatggatttttttgttaatatttcgTGTTCAGTCTTCAGCGAGGCTTCATGCTTCATGATGATCTTAATCATTCAGTTCTCCTGCTGCGATTTTGgataaacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaacagcAGAAAGCAGACTGAGACTCCAGAGACCTGCAGAGCtgtctcaccacacacacacacacacacacacacacacacacacacacacacacacggctgaaAGGTCAGGACAGGCGCGGCTAAACAGATGCTAATCCTCTCCTCTGGGACACAGGGATTGAACGACACGACCTTTACTGCGggaaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgggatGGAGCCATGCTCTCGCTATAAACACTACGTGACCTGATTATAATGGTCGTATACCTGTAGACGTGTGGTGGATGTTTACTGTGTCTCTTCATCACTGTGTTAGTCTCAGATAAGCAACATCACTCTAAATAAAAACTTCATCTGAGTTCACCAGCGCAGGTTACAGGCTAAGCTAAGATAGCCATGCTGGAGAATCTACTGACTTTAGGGAGTTATGATGCTAGTACTGCTAGATAATAACACAAACTCATTTACTTTCATCTACAAACCACAATATtatcaactctctctctctctgtatctctctctctgtctgtctctctctctctctgtctctctgtctgtctctctctgtctctctctctctctctctctctctgtatctctctctctgtctctctctctctctctctctctctctctctctctctctgtctgtctctctctctctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448053 True 2312 lncRNA 0.45 2 18358478 18360907

Neighbor

gene id symbol gene type direction distance location
parn parn,LOC108258427 coding upstream 49426 18293758 ~ 18309052 (+)
LOC113524897 LOC108258756 coding upstream 182707 18172630 ~ 18175771 (+)
trnak-uuu_20 NA coding upstream 238741 18119665 ~ 18119737 (+)
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding upstream 406300 17941545 ~ 17952178 (+)
LOC113524905 gpr108,LOC108413117 coding upstream 416144 17919058 ~ 17942334 (+)
LOC113524838 bfar coding downstream 8137 18369044 ~ 18375405 (+)
LOC117596190 gtf3c1 coding downstream 25020 18385927 ~ 18390650 (+)
LOC113524839 NA coding downstream 138081 18498988 ~ 18504740 (+)
LOC117596189 NA coding downstream 162254 18523161 ~ 18527596 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding downstream 303180 18664087 ~ 18674601 (+)
G378136 NA non-coding upstream 6667 18342233 ~ 18351811 (+)
G378129 NA non-coding upstream 30305 18327771 ~ 18328173 (+)
G378114 NA non-coding upstream 45126 18312034 ~ 18313352 (+)
G377813 NA non-coding upstream 151858 18204644 ~ 18206620 (+)
G377770 NA non-coding upstream 248085 18110094 ~ 18110393 (+)
G378150 NA non-coding downstream 39686 18400593 ~ 18401249 (+)
G378151 NA non-coding downstream 42927 18403834 ~ 18459466 (+)
G378163 eri2 non-coding downstream 174744 18535651 ~ 18536333 (+)
G378166 NA non-coding downstream 189956 18550863 ~ 18551872 (+)
G378203 NA non-coding downstream 267571 18628478 ~ 18631582 (+)
G378105 LOC108258757 other upstream 71168 18282994 ~ 18287310 (+)
rdh8b LOC108258824,LOC108258753 other upstream 192253 18158093 ~ 18166225 (+)
G377748 LOC108258742 other upstream 289532 18062418 ~ 18068946 (+)
G377747 NA other upstream 301673 18055624 ~ 18056805 (+)
LOC113524903 NA other upstream 353338 17983486 ~ 18005140 (+)
txndc11 txndc11 other downstream 21416 18382323 ~ 18549969 (+)
G378160 NA other downstream 133933 18494840 ~ 18496043 (+)
cdc37 cdc37 other downstream 241660 18602567 ~ 18609984 (+)
LOC113525834 LOC108258740,LOC108412431 other downstream 420131 18781038 ~ 18822056 (+)
G378354 LOC108258755 other downstream 576593 18937500 ~ 18942328 (+)

Expression


Co-expression Network