G378129


Basic Information

Item Value
gene id G378129
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18327771 ~ 18328173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448074
GACAACTGCACCGCACCAAAGGGACGATGGACGGGGTCATGTACCGTCAAATCTTGGGTGAGAACCTCCTTCCCTCAGCCAGGGCATTGAAAATGGGTCATGGATGggtattccagcatgacaatgacccaaaacacacggccaaggcaacaaaggagtggctcaAGAAGAAGCACATTAAGGTCCTGGAGTGGCCTTGACAGTCTCCAGACCTTAATCCCATAGAAAATCTGTGGAGGAAGCTGAAGGTTCGAGCTGCCAAACGTCAGCCTCGAAACCTTAATGACTTGGAGAGGATCTGCAAAGAGGAGTGGGACAGAATCCCTCCTGAGATGTGTGCAAACCTGGTGGCCATCTACAGGAAACGTCTGAACTCTGTGATTGCCAAGAAGGGTTTTGCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448074 True 403 lncRNA 0.51 1 18327771 18328173

Neighbor

gene id symbol gene type direction distance location
parn parn,LOC108258427 coding upstream 18719 18293758 ~ 18309052 (+)
LOC113524897 LOC108258756 coding upstream 152000 18172630 ~ 18175771 (+)
trnak-uuu_20 NA coding upstream 208034 18119665 ~ 18119737 (+)
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding upstream 375593 17941545 ~ 17952178 (+)
LOC113524905 gpr108,LOC108413117 coding upstream 385437 17919058 ~ 17942334 (+)
LOC113524838 bfar coding downstream 40871 18369044 ~ 18375405 (+)
LOC117596190 gtf3c1 coding downstream 57754 18385927 ~ 18390650 (+)
LOC113524839 NA coding downstream 170815 18498988 ~ 18504740 (+)
LOC117596189 NA coding downstream 194988 18523161 ~ 18527596 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding downstream 335914 18664087 ~ 18674601 (+)
G378114 NA non-coding upstream 14419 18312034 ~ 18313352 (+)
G377813 NA non-coding upstream 121151 18204644 ~ 18206620 (+)
G377770 NA non-coding upstream 217378 18110094 ~ 18110393 (+)
G377759 NA non-coding upstream 251432 18074872 ~ 18076339 (+)
G377757 NA non-coding upstream 253267 18073479 ~ 18074504 (+)
G378136 NA non-coding downstream 14060 18342233 ~ 18351811 (+)
G378118 NA non-coding downstream 30305 18358478 ~ 18360907 (+)
G378150 NA non-coding downstream 72420 18400593 ~ 18401249 (+)
G378151 NA non-coding downstream 75661 18403834 ~ 18459466 (+)
G378163 eri2 non-coding downstream 207478 18535651 ~ 18536333 (+)
G378105 LOC108258757 other upstream 40461 18282994 ~ 18287310 (+)
rdh8b LOC108258824,LOC108258753 other upstream 161546 18158093 ~ 18166225 (+)
G377748 LOC108258742 other upstream 258825 18062418 ~ 18068946 (+)
G377747 NA other upstream 270966 18055624 ~ 18056805 (+)
LOC113524903 NA other upstream 322631 17983486 ~ 18005140 (+)
txndc11 txndc11 other downstream 54150 18382323 ~ 18549969 (+)
G378160 NA other downstream 166667 18494840 ~ 18496043 (+)
cdc37 cdc37 other downstream 274394 18602567 ~ 18609984 (+)
LOC113525834 LOC108258740,LOC108412431 other downstream 452865 18781038 ~ 18822056 (+)
G378354 LOC108258755 other downstream 609327 18937500 ~ 18942328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G147636 NA unknown CI01000028 null 5216090 ~ 5216611 (+)
rainbow trout (Oncorhynchus mykiss) G1712160 NA non-coding NC_048585.1 CM023239.2 17291248 ~ 17291758 (+)
eurasian perch (Perca fluviatilis) G36458 LOC100304472,LOC107385856 misc NC_053115.1 CM020912.1 7209996 ~ 7272368 (+)
bowfin (Amia calva) G142828 NA non-coding CM030140.1 CM030140.1 307116 ~ 351627 (-)
mexican tetra (Astyanax mexicanus) G132844 NA non-coding NC_035911.1 CM008314.1 18185377 ~ 18197642 (+)