Gene
RNA
| Item | Value |
|---|---|
| gene id | G378136 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 18342233 ~ 18351811 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU448081 | True | 666 | lncRNA | 0.49 | 2 | 18342233 | 18351811 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| parn | parn,LOC108258427 | coding | upstream | 33181 | 18293758 ~ 18309052 (+) |
| LOC113524897 | LOC108258756 | coding | upstream | 166462 | 18172630 ~ 18175771 (+) |
| trnak-uuu_20 | NA | coding | upstream | 222496 | 18119665 ~ 18119737 (+) |
| soul5l | LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 | coding | upstream | 390055 | 17941545 ~ 17952178 (+) |
| LOC113524905 | gpr108,LOC108413117 | coding | upstream | 399899 | 17919058 ~ 17942334 (+) |
| LOC113524838 | bfar | coding | downstream | 17233 | 18369044 ~ 18375405 (+) |
| LOC117596190 | gtf3c1 | coding | downstream | 34116 | 18385927 ~ 18390650 (+) |
| LOC113524839 | NA | coding | downstream | 147177 | 18498988 ~ 18504740 (+) |
| LOC117596189 | NA | coding | downstream | 171350 | 18523161 ~ 18527596 (+) |
| sp6 | LOC108258788,LOC108418435,LOC108418467 | coding | downstream | 312276 | 18664087 ~ 18674601 (+) |
| G378129 | NA | non-coding | upstream | 14060 | 18327771 ~ 18328173 (+) |
| G378114 | NA | non-coding | upstream | 28881 | 18312034 ~ 18313352 (+) |
| G377813 | NA | non-coding | upstream | 135613 | 18204644 ~ 18206620 (+) |
| G377770 | NA | non-coding | upstream | 231840 | 18110094 ~ 18110393 (+) |
| G377759 | NA | non-coding | upstream | 265894 | 18074872 ~ 18076339 (+) |
| G378118 | NA | non-coding | downstream | 6667 | 18358478 ~ 18360907 (+) |
| G378150 | NA | non-coding | downstream | 48782 | 18400593 ~ 18401249 (+) |
| G378151 | NA | non-coding | downstream | 52023 | 18403834 ~ 18459466 (+) |
| G378163 | eri2 | non-coding | downstream | 183840 | 18535651 ~ 18536333 (+) |
| G378166 | NA | non-coding | downstream | 199052 | 18550863 ~ 18551872 (+) |
| G378105 | LOC108258757 | other | upstream | 54923 | 18282994 ~ 18287310 (+) |
| rdh8b | LOC108258824,LOC108258753 | other | upstream | 176008 | 18158093 ~ 18166225 (+) |
| G377748 | LOC108258742 | other | upstream | 273287 | 18062418 ~ 18068946 (+) |
| G377747 | NA | other | upstream | 285428 | 18055624 ~ 18056805 (+) |
| LOC113524903 | NA | other | upstream | 337093 | 17983486 ~ 18005140 (+) |
| txndc11 | txndc11 | other | downstream | 30512 | 18382323 ~ 18549969 (+) |
| G378160 | NA | other | downstream | 143029 | 18494840 ~ 18496043 (+) |
| cdc37 | cdc37 | other | downstream | 250756 | 18602567 ~ 18609984 (+) |
| LOC113525834 | LOC108258740,LOC108412431 | other | downstream | 429227 | 18781038 ~ 18822056 (+) |
| G378354 | LOC108258755 | other | downstream | 585689 | 18937500 ~ 18942328 (+) |
