G378163 (eri2)


Basic Information

Item Value
gene id G378163
gene name eri2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18535651 ~ 18536333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448134
GGCGTGTGTGACGGGCGTGTCCGGGCGTGACGCGTGTGTGACGGGCGTGTCCGGGCGTGACGCGTGTGTGACGGGCGTGTCCGGGCGTGACGCGTGTGTGACGGACAGTGTGTGCAGTGGGGTGGTGATAGAGGACAGGACGGTGCGCAGAGGTACCagactctgacacacactcgtGCGTGATGATGTCACGGTGTgtaaccctgtgtgtgtgtcgccgGTGTGTGTCGGCCGCTTCTCTTTCCTCTCGTTACACACACgtccatcagcacacacacctcgCACCGGTGCTCCGGACTTCAGCGGtgc

Function

symbol description
eri2 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Orthologous to human ERI2 (ERI1 exoribonuclease family member 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448134 True 309 lncRNA 0.64 2 18535651 18536333

Neighbor

gene id symbol gene type direction distance location
LOC117596189 NA coding upstream 8055 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 30911 18498988 ~ 18504740 (+)
LOC117596190 gtf3c1 coding upstream 145001 18385927 ~ 18390650 (+)
LOC113524838 bfar coding upstream 160246 18369044 ~ 18375405 (+)
parn parn,LOC108258427 coding upstream 226599 18293758 ~ 18309052 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding downstream 127754 18664087 ~ 18674601 (+)
LOC113524847 LOC108258823 coding downstream 498178 19034511 ~ 19105679 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding downstream 589501 19125834 ~ 19139249 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 663694 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 731150 19267483 ~ 19283319 (+)
G378151 NA non-coding upstream 76185 18403834 ~ 18459466 (+)
G378150 NA non-coding upstream 134402 18400593 ~ 18401249 (+)
G378118 NA non-coding upstream 174744 18358478 ~ 18360907 (+)
G378136 NA non-coding upstream 183840 18342233 ~ 18351811 (+)
G378129 NA non-coding upstream 207478 18327771 ~ 18328173 (+)
G378166 NA non-coding downstream 14530 18550863 ~ 18551872 (+)
G378203 NA non-coding downstream 92145 18628478 ~ 18631582 (+)
G378206 NA non-coding downstream 102868 18639201 ~ 18639825 (+)
G378296 NA non-coding downstream 172956 18709289 ~ 18709713 (+)
G378306 NA non-coding downstream 257762 18794095 ~ 18827675 (+)
G378160 NA other upstream 39608 18494840 ~ 18496043 (+)
G378105 LOC108258757 other upstream 248341 18282994 ~ 18287310 (+)
rdh8b LOC108258824,LOC108258753 other upstream 369426 18158093 ~ 18166225 (+)
G377748 LOC108258742 other upstream 466705 18062418 ~ 18068946 (+)
G377747 NA other upstream 478846 18055624 ~ 18056805 (+)
cdc37 cdc37 other downstream 66234 18602567 ~ 18609984 (+)
LOC113525834 LOC108258740,LOC108412431 other downstream 244705 18781038 ~ 18822056 (+)
G378354 LOC108258755 other downstream 401167 18937500 ~ 18942328 (+)
LOC113529661 LOC108258823 other downstream 409749 18946082 ~ 19021923 (+)
G378376 NA other downstream 603472 19139805 ~ 19142137 (+)

Expression


Co-expression Network