G378203


Basic Information

Item Value
gene id G378203
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18628478 ~ 18631582 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448187
ccCTGATACTGATGTTCACATCACAATACATGTGCCATACACATCATCAGAGATATAATGATCACATGATCAGTTCTCACATTTACTGTgtaaaataactgcatgaactAGAATAACCTCTGTGACCTCAGGATAACCTCTGTGACCTCAGAATGAACCCTGTGACCTCAGAATGAACCCTATTTTACCTCGAAACCCATGACCTCTGTGACCCTGGTTCCCTCTGGGCTAGCTTTGTTTCCCATAATTACCTCAGTGTTACCTATTTGACCCCAGAATGACCTGTGACCTCAGAATGACCCCAGTATTACCTTTCTGACCCCACATTGACCTGTGTGACCTCTTAATGACCCCAGTGTTACCATTCTGACCCCAAAATCACCCATGTGGTGTCATGATTCGTACCCTGAGTGGGTTGGAGAGCAGCAGTATCTGAGAGAGGGCAGCAGGGGGCAGCAGAGGGCTGTATGGAGGCAGTgtgcttcctgtagctgcctgcagcctcacacacatattctaacagagagagagagagagagagagagagagagagagagagagatgaaaatgaCTGGTAGATGAATAAAGTGATTGCAGGATGAAGGAGAATGCGTGAACAGTGTGAGTTGTTTCAGAATGTGGAGACTGACAGATgcttgttattattaattattatgaataaagtattaataataaatctttttaaaactttattaaacacaGATCTTTATAAAGATTATGTGTATAGTGTGCTtctcatgtttatttaaaagtgaCAAAAATGCAACGCTActcagcataaacatgtgcattTTTACTTTGGGAACGGCAGCCAGGAAGAGGAagtcagaaacaggaagtggtgaAGTGTTAACCGCAGAGACGATGATGACGGCAACATCAGGGTGAGACGGAGGAGCTTCTTTAGTGAAGTGCAGAGAGACATGGACACCACGATGATTAAACACTGTTATAGGCTTAATGTgacctacaacacacacattaaataaatcttttagtCTTCACGTGGTTTGGACACATCATATTCTCCCACAATCCCATTTCATCACTGAACACGTCACTCACTGGGCTTAACGGAGTCCAGAGAGACAGTGATGTCAGCGAGGGATGAAGCAGGGCAGGGTTTAGGAACACCACCTGATGCGACTGGCTGATTGTTGCTCGAAGCTGATCTGGACTGCAGCTCTAGCTTCCTGAAGAGAAACACGCAACACCTCAGTGCTTAAAGTCacacaaaagaacagaaacattCCATTTCCCAGCTTTCACTCACGCTGCTGATAATACTGATGCACTGTGGGTAATGTAGTCTTCATTTCTGTAAGCCATCTCCATTTGTCCTGTTTCACTCATAATGTTCACCGTGTCCTCCAACTGCAAACAAAAATCAGGTTTGATCTCCAGCCATGGACTGATCCTCACTCTATAGCCATGGACTGATCCTCACTCTACAGCCATGCACTGATCCTCTCTCTACAGCCATGCACTGATCCTCACTCTACAGCCATGCACTGATCCTCACTCTCCAGCCATGGACTGATCCTCACTCTCCAGCCATGCACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTACAGCCATGCACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTCCAGCCATGCACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTCCAGCCATGGACTGATCCTCACTCTACAGCCATGCACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTCCAGCCATGCACTGATCCTCACTCTCCAGCCATGGACTGATCCTCACTCTCCAGCCATGCACTGATCCTCACTCTCCAGCCATGCACTGATCCTCTCTCTCCAGCCATGGACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTCCAGCCATGCACTGATCCTCACTCTCCAGCCATGCACTGATCCTCACTCTACAGCCATGCACTGATCCTCACTCTCCAGCCATGCACTGATCCTCTCTCTACAGCCATGCACTGATCCTCACTCTCCAGCCATGGACTGATCCTCACTCTACAGCCATGCACTGATCCTCACTCTACAGCCATGGACTGATCCTCACTCTCCAGCCATGGACTGATCCTCACTCTCCAGCCATGCACTGATCCTCACTCTCTAGCCATGCACTGATCCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448187 True 2293 lncRNA 0.47 2 18628478 18631582

Neighbor

gene id symbol gene type direction distance location
LOC117596189 NA coding upstream 100882 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 123738 18498988 ~ 18504740 (+)
LOC117596190 gtf3c1 coding upstream 237828 18385927 ~ 18390650 (+)
LOC113524838 bfar coding upstream 253073 18369044 ~ 18375405 (+)
parn parn,LOC108258427 coding upstream 319426 18293758 ~ 18309052 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding downstream 32505 18664087 ~ 18674601 (+)
LOC113524847 LOC108258823 coding downstream 402929 19034511 ~ 19105679 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding downstream 494252 19125834 ~ 19139249 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 568445 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 635901 19267483 ~ 19283319 (+)
G378166 NA non-coding upstream 76606 18550863 ~ 18551872 (+)
G378163 eri2 non-coding upstream 92145 18535651 ~ 18536333 (+)
G378151 NA non-coding upstream 169012 18403834 ~ 18459466 (+)
G378150 NA non-coding upstream 227229 18400593 ~ 18401249 (+)
G378118 NA non-coding upstream 267571 18358478 ~ 18360907 (+)
G378206 NA non-coding downstream 7619 18639201 ~ 18639825 (+)
G378296 NA non-coding downstream 77707 18709289 ~ 18709713 (+)
G378306 NA non-coding downstream 162513 18794095 ~ 18827675 (+)
G378308 NA non-coding downstream 168192 18799774 ~ 18834222 (+)
G378307 NA non-coding downstream 173030 18804612 ~ 18805264 (+)
cdc37 cdc37 other upstream 18494 18602567 ~ 18609984 (+)
txndc11 txndc11 other upstream 78509 18382323 ~ 18549969 (+)
G378160 NA other upstream 132435 18494840 ~ 18496043 (+)
G378105 LOC108258757 other upstream 341168 18282994 ~ 18287310 (+)
rdh8b LOC108258824,LOC108258753 other upstream 462253 18158093 ~ 18166225 (+)
LOC113525834 LOC108258740,LOC108412431 other downstream 149456 18781038 ~ 18822056 (+)
G378354 LOC108258755 other downstream 305918 18937500 ~ 18942328 (+)
LOC113529661 LOC108258823 other downstream 314500 18946082 ~ 19021923 (+)
G378376 NA other downstream 508223 19139805 ~ 19142137 (+)
LOC113525637 LOC108258744,LOC108413824 other downstream 511099 19142681 ~ 19168611 (+)

Expression


Co-expression Network