Gene
RNA
| Item | Value |
|---|---|
| gene id | G378222 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 18277277 ~ 18280917 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU448219 | True | 239 | lncRNA | 0.52 | 2 | 18277277 | 18280917 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117596180 | LOC108258789,LOC108258806,LOC108258809,LOC108412240 | coding | downstream | 4811 | 18268253 ~ 18272466 (-) |
| LOC117596113 | LOC108258809 | coding | downstream | 26353 | 18247626 ~ 18250924 (-) |
| si:ch211-14a17.10 | NA | coding | downstream | 38343 | 18177378 ~ 18238934 (-) |
| col5a3b | col5a3b,LOC108258822,LOC107685048,LOC107723092,LOC108240707,LOC106522728 | coding | downstream | 148877 | 18102069 ~ 18128400 (-) |
| olfm2b | LOC108258425 | coding | downstream | 175835 | 18093572 ~ 18101442 (-) |
| LOC113546189 | LOC108258757 | coding | upstream | 4561 | 18285478 ~ 18292961 (-) |
| LOC117596179 | LOC108258739 | coding | upstream | 29855 | 18310772 ~ 18324071 (-) |
| LOC113524853 | gtf3c1 | coding | upstream | 47615 | 18328532 ~ 18337656 (-) |
| LOC113524862 | LOC108414501 | coding | upstream | 59576 | 18340493 ~ 18360680 (-) |
| LOC113524861 | NA | coding | upstream | 85182 | 18366099 ~ 18367512 (-) |
| G378102 | NA | non-coding | downstream | 4846 | 18246707 ~ 18272431 (-) |
| LOC117596181 | NA | non-coding | downstream | 29899 | 18246693 ~ 18247378 (-) |
| LOC117596118 | NA | non-coding | downstream | 200865 | 18073382 ~ 18076412 (-) |
| G378082 | NA | non-coding | downstream | 237005 | 18039642 ~ 18040272 (-) |
| G378054 | NA | non-coding | downstream | 348919 | 17927333 ~ 17928358 (-) |
| G378229 | NA | non-coding | upstream | 25104 | 18306021 ~ 18307324 (-) |
| G378232 | NA | non-coding | upstream | 27495 | 18308412 ~ 18308929 (-) |
| G378220 | NA | non-coding | upstream | 29366 | 18310283 ~ 18310656 (-) |
| G378241 | NA | non-coding | upstream | 54760 | 18335677 ~ 18375537 (-) |
| G378239 | NA | non-coding | upstream | 106159 | 18387076 ~ 18390173 (-) |
| LOC113524896 | LOC108258753 | other | downstream | 110317 | 18163546 ~ 18166960 (-) |
| G377994 | LOC108258810 | other | downstream | 462832 | 17793686 ~ 17814445 (-) |
| ubl5 | ubl5 | other | downstream | 564648 | 17707968 ~ 17712629 (-) |
| LOC113526761 | NA | other | downstream | 938471 | 17333296 ~ 17338806 (-) |
| G377862 | NA | other | downstream | 1009247 | 17266229 ~ 17268030 (-) |
| gpank1 | gpank1 | other | upstream | 80881 | 18361798 ~ 18365931 (-) |
| G378247 | NA | other | upstream | 89365 | 18370282 ~ 18372485 (-) |
| LOC113524840 | NA | other | upstream | 330560 | 18611477 ~ 18625171 (-) |
| ears2 | ears2 | other | upstream | 339898 | 18620815 ~ 18648389 (-) |
| LOC117596152 | NA | other | upstream | 399350 | 18680267 ~ 18685255 (-) |
