Gene
RNA
| Item | Value |
|---|---|
| gene id | G378252 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 18422617 ~ 18423142 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU448269 | True | 205 | lncRNA | 0.44 | 3 | 18422617 | 18423142 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117596188 | LOC108258748,LOC108258762,LOC108258764,LOC108258760 | coding | downstream | 17950 | 18392430 ~ 18404667 (-) |
| LOC113524859 | LOC108258821 | coding | downstream | 42852 | 18376579 ~ 18379765 (-) |
| LOC113524861 | NA | coding | downstream | 55105 | 18366099 ~ 18367512 (-) |
| LOC113524862 | LOC108414501 | coding | downstream | 61937 | 18340493 ~ 18360680 (-) |
| LOC113524853 | gtf3c1 | coding | downstream | 84961 | 18328532 ~ 18337656 (-) |
| LOC113524843 | LOC108258748,LOC108258762,LOC108258760,LOC108258764 | coding | upstream | 28466 | 18451608 ~ 18471315 (-) |
| LOC113524841 | LOC108258748,LOC108258762,LOC108258764,LOC108258760 | coding | upstream | 52256 | 18475398 ~ 18483881 (-) |
| thumpd1 | NA | coding | upstream | 69230 | 18492372 ~ 18496794 (-) |
| eri2 | NA | coding | upstream | 111221 | 18534363 ~ 18540290 (-) |
| LOC113524845 | NA | coding | upstream | 128251 | 18551393 ~ 18564916 (-) |
| G378239 | NA | non-coding | downstream | 32444 | 18387076 ~ 18390173 (-) |
| G378241 | NA | non-coding | downstream | 47080 | 18335677 ~ 18375537 (-) |
| G378220 | NA | non-coding | downstream | 111961 | 18310283 ~ 18310656 (-) |
| G378232 | NA | non-coding | downstream | 113688 | 18308412 ~ 18308929 (-) |
| G378229 | NA | non-coding | downstream | 115293 | 18306021 ~ 18307324 (-) |
| G378254 | NA | non-coding | upstream | 82963 | 18506105 ~ 18570213 (-) |
| G378265 | NA | non-coding | upstream | 120529 | 18543671 ~ 18544156 (-) |
| G378274 | NA | non-coding | upstream | 186054 | 18609196 ~ 18610008 (-) |
| G378284 | NA | non-coding | upstream | 217814 | 18640956 ~ 18642324 (-) |
| G378288 | NA | non-coding | upstream | 253668 | 18676810 ~ 18679017 (-) |
| G378247 | NA | other | downstream | 50132 | 18370282 ~ 18372485 (-) |
| gpank1 | gpank1 | other | downstream | 56686 | 18361798 ~ 18365931 (-) |
| LOC113524896 | LOC108258753 | other | downstream | 255657 | 18163546 ~ 18166960 (-) |
| G377994 | LOC108258810 | other | downstream | 608172 | 17793686 ~ 17814445 (-) |
| ubl5 | ubl5 | other | downstream | 709988 | 17707968 ~ 17712629 (-) |
| LOC113524840 | NA | other | upstream | 188335 | 18611477 ~ 18625171 (-) |
| ears2 | ears2 | other | upstream | 197673 | 18620815 ~ 18648389 (-) |
| LOC117596152 | NA | other | upstream | 257125 | 18680267 ~ 18685255 (-) |
| LOC117596153 | LOC108258823 | other | upstream | 266907 | 18690049 ~ 18742365 (-) |
| LOC113524858 | NA | other | upstream | 428144 | 18851286 ~ 18912617 (-) |
