LOC113524840


Basic Information

Item Value
gene id LOC113524840
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18611477 ~ 18625171 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448302
TTTATTTGGTCAGTTCACACACACTGGAGGTTGTCCGTGCTTTGAGATGgaactttgtgttttctcttcatTACTCACTGTACTGTGTGTGGGACTGTATGGGAAATCTACCTATGCAGataaaCCAAACATAACACAGCCTTTAAATGAGGCTCTGTCAATCACTGAAGGTAAACCCCTGATGCTAACCTGTTCAGCAGATGGAAACCCCAGCCCTCATTATGACTGGACTTTACTTAATAACACAACCATCTCAAACTTCTCCATCCACATCAGCAGTGTCAGATAAACCAAAATAAAGACCAGGGTCAGTTCAGCTGCACCCCCACAATGGACTTTACCTAATAACACAACCATCTCAAACTTCTCCATCCACATCAGCAGTGTCCGTAAAGAAGACCAGGGTCAGTACATCTGCACCGCCTACAATGACGTGGGCCAGGCAACAAGGAATGTGACTGTAACGGTTATAGCTGGCCACAATCCACACTTCATTTACTATATAGTGGCCATTATAGTGATGGTGGTGTCAGCTGTGGTCATCGCTGTGTGCTGCACGTATTACCGACGCACACGCATGGGTCAGTACATCCTGAAGCATCTGAGATCCCGCAGGCACAACGGCTATTTGGACCACAATGCTGAAGACCAAGCACAACTGTAGATACTGCTGAAGATAACATCTGTGTAATTATGCTGCGTTCAACTAAATTTCATAATTCTGAATTTCCGACCTCCAGTAGGAAATCCAAAGAAATCGCCCCGTCAACTCGGAGCTCCTTCTTGGAAGGTTGAGAgggtctcctcaaccccaagCTCAGCACGTGACattaaatcaacatggctgctcagaacattaacagtaaacacagcagcacgtCTTTCCTTTTAAACAGGTTGCTTTAGCTCAGTTAACATACAGTGATGATACAGTTCGCTCTACACTCATCACAGATAGCGAACAAGATAAACATGGAGGTCAAAAAACTTCCCACATTCCATAAgtttagtcgaatgcagcattaacactgacactagtGTAACTACTGCTAACCTCTCTGTACTGAGTGCTAGCTGGGAGCCCTGAGAAGACAGGGCTAACTCTTATTCATGTAGTTCATTTCCACAATGTagtattagtttttgttttttaaaaataagaatttgAAAAAACTGACTGTAGATCATGCTATTTACTGTGAAGTACAACTGTAGCTTATCGATGCATTACAGTATTTCATGGGTATTgcagtgtgaatgtgtaaaaCCTCAGGCCCAGCCTTTGCACAGGTTAACTGCTATTTTCTGCTCGTCAGCTTTCACTGTACAGTTTGAGGAGCTGGATCAATAAAACCCAAACTGGACCTGGCAATCATCATg
>TU448303
attattattacatttacagattttaataattAGACCAACTATATCTGTCGAAACATCCACAGGCTCTATCAGTCACTGAAGGTAAACCCCTGATGATAAACTGTTCAGCAGATGGAAACCCCAGCCCTCATTATGACTGGACTTTACTTAATAACACAACCATCTCAAACTTCTCCATCCACATCAGCAGTGTCCGTAAAGAAGACCAGGGTCAGTACATCTGCACCGCCTACAATGACGTGGGCCAGGCAACAAGGAATGTGACTGTAACGGTTATAGCTGGCCACAATCCACACTTCATTTACTATATAGTGGCCATTATAGTGATGGTGGTGTCAGCTGTGGTCATCGCTGTGTGCTGCACGTATTACCGACGCACACGCATGGGTCAGTACATCCTGAAGCATCTGAGATCCCGCAGGCACAACGGCTATTTGGACCACAATGCTGAAGACCAAGCACAACTGTAGATACTGCTGAAGATAACATCTGTGTAATTATGCTGCGTTCAACTAAATTTCATAATTCTGAATTTCCGACCTCCAGTAGGAAATCCAAAGAAATCGCCCCGTCAACTCGGAGCTCCTTCTTGGAAGGTTGAGAgggtctcctcaaccccaagCTCAGCACGTGACattaaatcaacatggctgctcagaacattaacagtaaacacagcagcacgtCTTTCCTTTTAAACAGGTTGCTTTAGCTCAGTTAACATACAGTGATGATACAGTTCGCTCTACACTCATCACAGATAGCGAACAAGATAAACATGGAGGTCAAAAAACTTCCCACATTCCATAAgtttagtcgaatgcagcattaacactgacactagtGTAACTACTGCTAACCTCTCTGTACTGAGTGCTAGCTGGGAGCCCTGAGAAGACAGGGCTAACTCTTATTCATGTAGTTCATTTCCACAATGTagtattagtttttgttttttaaaaataagaatttgAAAAAACTGACTGTAGATCATGCTATTTACTGTGAAGTACAACTGTAGCTTATCGATGCATTACAGTATTTCATGGGTATTgcagtgtgaatgtgtaaaaCCTCAGGCCCAGCCTTTGCACAGGTTAACTGCTATTTTCTGCTCGTCAGCTTTCACTGTACAGTTTGAGGAGCTGGATCAATAAAACCCAAACTGGACCTGGCAATCATCATg
>XM_034300237.1
CTGTGTCTGACGATGTGGGTAGAGGGAAATCAGACAGAGCTGAGGTGTGAGATTGAAAACGTTGGTCCTGGACATAAACTCAGTGTACGCTGGAGCAGAGCGGATCCGAAGCACAACAATGCTTTCACACAATTCAATGAAACGTCGTTCCCAGACTTGgtaaataagacaaacaacGTGAGCATGACAGTGAACTTAACCATTACGCCCAGCCGTGAGGATGATGGAGTGCAGTATCAGTGTGCAGCAGTGCTGAATGTGGACCAACCACCGCTCAACTACACATCACAACCACTCAACATCACTGTATACTataaaCCAAACATAACACAGCCTTTAAATGAGGCTCTGTCAATCACTGAAGGTAAACCCCTGATGCTAACCTGTTCAGCAGATGGAAACCCCAGCCCTCATTATGACTGGACTTTACTTAATAACACAACCATCTCAAACTTCTCCATCCACATCAGCAGTGTCCGTAAAGAAGACCAGGGTCAGTACATCTGCACCGCCTACAATGACGTGGGCCAGGCAACAAGGAATGTGACTGTAACGGTTATAGCTGGCCACAATCCACACTTCATTTACTATATAGTGGCCATTATAGTGATGGTGGTGTCAGCTGTGGTCATCGCTGTGTGCTGCACGTATTACCGACGCACACGCATGGGTCAGTACATCCTGAAGCATCTGAGATCCCGCAGGCACAACGGCTATTTGGACCACAATGCTGAAGACCAAGCACAACTGTAGATACTGCTGAAGATAACATCTGTGTAATTATGCTGCGTTCAACTAAATTTCATAATTCTGAATTTCCGACCTCCAGTAGGAAATCCAAAGAAATCGCCCCGTCAACTCGGAGCTCCTTCTTGGAAGGTTGAGAgggtctcctcaaccccaagCTCAGCACGTGACattaaatcaacatggctgctcagaacattaacagtaaacacagcagcacgtCTTTCCTTTTAAACAGGTTGCTTTAGCTCAGTTAACATACAGTGATGATACAGTTCGCTCTACACTCATCACAGATAGCGAACAAGATAAACATGGAGGTCAAAAAACTTCCCACATTCCATAAgtttagtcgaatgcagcattaacactgacactagtGTAACTACTGCTAACCTCTCTGTACTGAGTGCTAGCTGGGAGCCCTGAGAAGACAGGGCTAACTCTTATTCATGTAGTTCATTTCCACAATGTagtattagtttttgttttttaaaaataagaatttgAAAAAACTGACTGTAGATCATGCTATTTACTGTGAAGTACAACTGTAGCTTATCGATGCATTACAGTATTTCATGGGTATTgcagtgtgaatgtgtaaaaCCTCAGGCCCAGCCTTTGCACAGGTTAACTGCTATTTTCTGCTCGTCAGCTTTCACTGTACAGTTTGAGGAGCTGGATCAATAAAACCCAAACTGGACCTGGCAATCA
>XM_034300238.1
CTGTGTCTGACGATGTGGGTAGAGGGAAATCAGACAGAGCTGAGGTGTGAGATTGAAAACGTTGGTCCTGGACATAAACTCAGTGTACGCTGGAGCAGAGCGGATCCGAAGCACAACAATGCTTTCACACAATTCAATGAAACGTCGTTCCCAGACTTGgtaaataagacaaacaacGTGAGCATGACAGTGAACTTAACCATTACGCCCAGCCGTGAGGATGATGGAGTGCAGTATCAGTGTGCAGCAGTGCTGAATGTGGACCAACCACCGCTCAACTACACATCACAACCACTCAACATCACTGTATACTataaaCCAAACATAACACAGCCTTTAAATGAGGCTCTGTCAATCACTGAAGGTAAACCCCTGATGCTAACCTGTTCAGCAGATGGAAACCCCAGCCCTCATTATGACTGGACTTTACTTAATAACACAACCATCTCAAACTTCTCCATCCACATCAGCAGTGTCCGTAAAGAAGACCAGGGTCAGTACATCTGCACCGCCTACAATGACGTGGGCCAGGCAACAAGGAATGTGACTGTAACGGTTATAGCTGGCCACAATCCACACTTCATTTACTATATAGTGGCCATTATAGTGATGGTGGTGTCAGCTGTGGTCATCGCTGTGTGCTGCACGTATTACCGACGCACACGCATGGGTCAGTACATCCTGAAGCATCTGAGATCCCGCAGGCACAACGGCTATTTGGACCACAATGCTGAAGACCAAGCACAACTGTAGATACTGCTGAAGATAACATCTGTGTAATTATGCTGCGTTCAACTAAATTTCATAATTCTGAATTTCCGACCTCCAGTAGGAAATCCAAAGAAATCGCCCCGTCAACTCGGAGCTCCTTCTTGGAAGGTTGAGAgggtctcctcaaccccaagCTCAGCACGTGACattaaatcaacatggctgctcagaacattaacagtaaacacagcagcacgtCTTTCCTTTTAAACAGGTTGCTTTAGCTCAGTTAACATACAGTGATGATACAGTTCGCTCTACACTCATCACAGATAGCGAACAAGATAAACATGGAGGTCAAAAAACTTCCCACATTCCATAAgtttagtcgaatgcagcattaacactgacactagtGTAACTACTGCTAACCTCTCTGTACTGAGTGCTAGCTGGGAGCCCTGAGAAGACAGGGCTAACTCTTATTCATGTAGTTCATTTCCACAATGTagtattagtttttgttttttaaaaataagaatttgAAAAAACTGACTGTAGATCATGCTATTTACTGTGAAGTACAACTGTAGCTTATCGATGCATTACAGTATTTCATGGGTATTgcagtgtgaatgtgtaaaaCCTCAGGCCCAGCCTTTGCACAGGTTAACTGCTATTTTCTGCTCGTCAGCTTTCACTGTACAGTTTGAGGAGCTGGATCAATAAAACCCAAACTGGACCTGGCAATCA

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0007599 hemostasis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448302 False 1380 lncRNA 0.43 3 18611477 18625171
TU448303 False 1186 TUCP 0.42 4 18611477 18618929
XM_034300237.1 False 1464 mRNA 0.44 4 18611482 18616789
XM_034300238.1 True 1464 mRNA 0.44 4 18611482 18616789

Neighbor

gene id symbol gene type direction distance location
LOC113524846 NA coding downstream 11959 18594473 ~ 18599518 (-)
LOC113524851 LOC108258727 coding downstream 25211 18564829 ~ 18586266 (-)
LOC113524845 NA coding downstream 46561 18551393 ~ 18564916 (-)
eri2 NA coding downstream 71187 18534363 ~ 18540290 (-)
thumpd1 NA coding downstream 114683 18492372 ~ 18496794 (-)
LOC113524849 gga2 coding upstream 2764 18627935 ~ 18639097 (-)
LOC117595722 LOC108258755 coding upstream 119265 18744436 ~ 18751077 (-)
LOC113525404 LOC108258581 coding upstream 679499 19304670 ~ 19313410 (-)
G378274 NA non-coding downstream 1469 18609196 ~ 18610008 (-)
G378254 NA non-coding downstream 41264 18506105 ~ 18570213 (-)
G378265 NA non-coding downstream 67321 18543671 ~ 18544156 (-)
G378252 NA non-coding downstream 188335 18422617 ~ 18423142 (-)
G378239 NA non-coding downstream 221304 18387076 ~ 18390173 (-)
G378284 NA non-coding upstream 15785 18640956 ~ 18642324 (-)
G378288 NA non-coding upstream 51639 18676810 ~ 18679017 (-)
G378297 NA non-coding upstream 84101 18709272 ~ 18709642 (-)
LOC117596138 NA non-coding upstream 165291 18790462 ~ 18791226 (-)
G378328 LOC108258740 non-coding upstream 169172 18794343 ~ 18827952 (-)
G378247 NA other downstream 238992 18370282 ~ 18372485 (-)
gpank1 gpank1 other downstream 245546 18361798 ~ 18365931 (-)
LOC113524896 LOC108258753 other downstream 444517 18163546 ~ 18166960 (-)
G377994 LOC108258810 other downstream 797032 17793686 ~ 17814445 (-)
ubl5 ubl5 other downstream 898848 17707968 ~ 17712629 (-)
LOC117596152 NA other upstream 55096 18680267 ~ 18685255 (-)
LOC117596153 LOC108258823 other upstream 64878 18690049 ~ 18742365 (-)
LOC113524858 NA other upstream 226115 18851286 ~ 18912617 (-)
G378357 LOC108258755 other upstream 317308 18942479 ~ 18943175 (-)

Expression


Co-expression Network