LOC113525834 (LOC108258740,LOC108412431)


Basic Information

Item Value
gene id LOC113525834
gene name LOC108258740,LOC108412431
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18781038 ~ 18822056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448343
GGCGGATTTACCACAGGAATGTAAGTGGGAATGTCGGGTTTCTCTTCACACTGCGGTGTGTAACGcgaacacacactgctgtgcgCAGAGTAATGAGGTAAAGAGGACGCTGTGGACAGTGTGTGGTCACTCACAGGGAAGATAAAGAATGGACACCGTGGATGCGGcacTCTACTCCAGCAGGCAGGCCGCGGTCAGTAACCCCCTGCTGGACCAGCTGCCCAGTTACCAGTCCCTGCTGTACAGGAGGAAGTCGTCAGGCAGCAGTAAGAGGCGCAGTTCCACACGGGGGCGCTACAGCTCCACCAGCAGCTCCTCAGAGGTCGTAGCTAGCAGAGGGGGCGGGGTTCAGGACAG
>XM_034300150.1
ATGGACACCGTGGATGCGGcgcTCTACTCCAGCAGGCAGGCAGCGGTCAGTAACCCCCTGCTGGACCAGCTGCCCAGTTACCAGTCCCTGCTGTACAGGAGGAAAGCAGAGAGCGGGGTTCAGGACAGGAAATGGGCGTACGGGAGGGGGGGCAGAACGATTCGTGGAGCCACCGAAGACAAACCTGCACGAGAACTTCCGTGGAGCATGGAGGAGAAACGCAAAcacagggagcagcagcacagagagctgGGTGTGTGCTCTCAGTGGAGAGTCAGCGCTCGTCACTATCTGAAGAGGATGAAGGAGGACAGCACAGTGTTtctgaacacactgcagctgtggaggagtgatattcaccttatagagggTATGTTTGGTACAGGGATCCTGTCATACTTCTCGTTCCTGCGCTTCTTGGTTCTGCTGAACTTTGTGATGTTCCTGCTGATGTTCAGTTTTGTCATGCTGCCCATCATCGTGTCCAGACACTCCTCGTCCATCAGCTCCACTCTGACCACAGGGGGCGCTACAGGGGGTCAGTGCAGCGTTTACTCTCGCTCCTCCTCTCAGAAGGGACTCGTCATGTTCCACCAGCACATCATCGACCTGCTGTCTGGCACGggCTTCCTGGAACACACCTACCTGTTCTATGGTTATTATAATGTGGAGTCAGTAAGCTTCTCACACTTCAGCTATAACGTGCCGTTAGCCTACGTGCTCTGCACCATCACCTACCTGCTGCTCAGCCTCATCTGGATCGTCAAGAGgtcaGCTGCAGGCTTTAAGAGGAAGCTGATTCAGGATGAAGATCGGTTCCAGAGTTTTTGTAATAAGATCTTCGCCGGCTGGGATTTCTGTATAACCAATGAGAACGCAGCACGTTTAAAACACAGCAGCCTGCTCTATGAGCTCAAgacggATCTGGAGGAGGAGCGGATCAGGCAGAAGATGGCCGAGCGTTCCCAGAAGGAGAAATGTCGTATCTACTCCCTCCGAGTCGCCCTCAACCTGTTTGTGATCGCCGTGCTCGTCTGCTGCTTCTACTGCATCTACAGTGCCACCATCTTCTCCCAGCAGGCCCAGGCTCAGaatCAGCAGTATACCTTCATAGTGGAGCTGATATTTGAGTATCTGCCCTCCATTGTCATCACACTGGCCAATTTCATCACTCCCATGATcttcagcatcatcatcagctTCGAGGATTACTCTCCTGCCTTCGAGATCCGCTTCACACTCCtcaggtgtgtgtttatgcgtTTGGCCAGTATTGGAGTCCTGCTGTTCTCTCTGTGGTCTCAGATCACCTCCTGCTCCTGGACAGAGGACACAGTGTGTCCCTGTGGATACAACCACACTCTTTACccttgctgggAGACTCATGTAGGCCAGGAGATGTACAAGCTGATGATCTTTGATTTCCTCATCATTGGGGCGGTCACTGTCTTCGTTGAGTTTCCCAGGAAgaTCCTGGTGAATCACTGTGACTTTGGTTTGATAAAGTGGTTGGGTCAGCAGGAGTTCTCCATCCCTCAGAACGTTTTGGAGATCGTCTACGGGCAGACCATCTGCTGGATCGGAACGTTCTACTGCCCCCTGATGCCtgccatcaacaccatcaagTACTTCCTCGTCTTCTACATCAAGAAGGTGACGCTGGTGAATAACTGTCGTCCTGCGTCTCGTCCGTTCCGTGCCAGCAGCTCCAACTTCTTCTTCCTGGCAGTGCTGCTGATTGGATTAGCACTTGCTACACTTCCTGTTACAGTCAGCATTgcacagtgagacacacacacacacccacac

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU448343 False 357 TUCP 0.58 2 18781038 18822056
XM_034300150.1 True 1809 mRNA 0.53 13 18781186 18804485

Neighbor

gene id symbol gene type direction distance location
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 106437 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 253442 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 276298 18498988 ~ 18504740 (+)
LOC117596190 gtf3c1 coding upstream 390388 18385927 ~ 18390650 (+)
LOC113524838 bfar coding upstream 405633 18369044 ~ 18375405 (+)
LOC113524847 LOC108258823 coding downstream 212455 19034511 ~ 19105679 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding downstream 303778 19125834 ~ 19139249 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 377971 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 445427 19267483 ~ 19283319 (+)
G378296 NA non-coding upstream 71325 18709289 ~ 18709713 (+)
G378206 NA non-coding upstream 141213 18639201 ~ 18639825 (+)
G378203 NA non-coding upstream 149456 18628478 ~ 18631582 (+)
G378166 NA non-coding upstream 229166 18550863 ~ 18551872 (+)
G378163 eri2 non-coding upstream 244705 18535651 ~ 18536333 (+)
G378313 NA non-coding downstream 12391 18834447 ~ 18837111 (+)
G378361 NA non-coding downstream 150922 18972978 ~ 18973189 (+)
G378367 NA non-coding downstream 181688 19003744 ~ 19004045 (+)
G378369 NA non-coding downstream 183328 19005384 ~ 19005616 (+)
G378380 NA non-coding downstream 275352 19097408 ~ 19097613 (+)
cdc37 cdc37 other upstream 171054 18602567 ~ 18609984 (+)
txndc11 txndc11 other upstream 231069 18382323 ~ 18549969 (+)
G378160 NA other upstream 284995 18494840 ~ 18496043 (+)
G378105 LOC108258757 other upstream 493728 18282994 ~ 18287310 (+)
rdh8b LOC108258824,LOC108258753 other upstream 614813 18158093 ~ 18166225 (+)
G378354 LOC108258755 other downstream 115444 18937500 ~ 18942328 (+)
LOC113529661 LOC108258823 other downstream 124026 18946082 ~ 19021923 (+)
G378376 NA other downstream 317749 19139805 ~ 19142137 (+)
LOC113525637 LOC108258744,LOC108413824 other downstream 320625 19142681 ~ 19168611 (+)

Expression


Co-expression Network