G378308


Basic Information

Item Value
gene id G378308
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18799774 ~ 18834222 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448352
gttagtgagtgtgtgttagtgagtgtgttcaggagtgtgtgttcaggagtgtgtgttagtgagtgtgtgttagtgagtgtgttcaggagtgtgtgttagtgagtatGTGTTAGTGAGTatgttcaggagtgtgttcaggagtgtgttcaggagtgtttgttagtgagtgtgttcaggagtgtgtgttagtgagtgtgtgttagtgagtgtgttagtgagtgtgttcaggagtgtgtgttagtgagtgtgttcaggagtgtgtgagagtgtgtgtcagtg
>TU448353
caggagtgtgtgttagtgagtgtgttcaggagtatgtgttagtgagtgtgtgttagtgagtgtgttcaggagtatgtgttagtgagtgtgtgttagtgagtgtgttcaggagtgtgtgttagtgagtatGTGTTAGTGAGTatgttcaggagtgtgttcaggagtgtgttcaggagtgtttgttagtgagtgtgttcaggagtgtgtgttagtgagtgtgtgttagtgagtgtgttagtgagtgtgttcaggagtgtgtgttagtgagtgtgttcaggagtgtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448352 False 279 lncRNA 0.45 5 18799774 18834222
TU448353 True 286 lncRNA 0.44 3 18802766 18803611

Neighbor

gene id symbol gene type direction distance location
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 125173 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 272178 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 295034 18498988 ~ 18504740 (+)
LOC117596190 gtf3c1 coding upstream 409124 18385927 ~ 18390650 (+)
LOC113524838 bfar coding upstream 424369 18369044 ~ 18375405 (+)
LOC113524847 LOC108258823 coding downstream 200289 19034511 ~ 19105679 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding downstream 291612 19125834 ~ 19139249 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 365805 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 433261 19267483 ~ 19283319 (+)
G378296 NA non-coding upstream 90061 18709289 ~ 18709713 (+)
G378206 NA non-coding upstream 159949 18639201 ~ 18639825 (+)
G378203 NA non-coding upstream 168192 18628478 ~ 18631582 (+)
G378166 NA non-coding upstream 247902 18550863 ~ 18551872 (+)
G378163 eri2 non-coding upstream 263441 18535651 ~ 18536333 (+)
G378313 NA non-coding downstream 225 18834447 ~ 18837111 (+)
G378361 NA non-coding downstream 138756 18972978 ~ 18973189 (+)
G378367 NA non-coding downstream 169522 19003744 ~ 19004045 (+)
G378369 NA non-coding downstream 171162 19005384 ~ 19005616 (+)
G378380 NA non-coding downstream 263186 19097408 ~ 19097613 (+)
cdc37 cdc37 other upstream 189790 18602567 ~ 18609984 (+)
txndc11 txndc11 other upstream 249805 18382323 ~ 18549969 (+)
G378160 NA other upstream 303731 18494840 ~ 18496043 (+)
G378105 LOC108258757 other upstream 512464 18282994 ~ 18287310 (+)
rdh8b LOC108258824,LOC108258753 other upstream 633549 18158093 ~ 18166225 (+)
G378354 LOC108258755 other downstream 103278 18937500 ~ 18942328 (+)
LOC113529661 LOC108258823 other downstream 111860 18946082 ~ 19021923 (+)
G378376 NA other downstream 305583 19139805 ~ 19142137 (+)
LOC113525637 LOC108258744,LOC108413824 other downstream 308459 19142681 ~ 19168611 (+)

Expression


Co-expression Network