LOC113524858


Basic Information

Item Value
gene id LOC113524858
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18851286 ~ 18912617 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448402
tgataACAATGGAAATACAAGTATCACCACAGTGGCGAAGACTCTGCCTGTTCAGTTCAGTGTAGATGTGGACATCAGCCCTGTTCCTGAGCTTTCTGTAACATATCTGGATTTCTCTCTGGAAGATAAAGGCCCAAAACCTATCACTGTTGTGTATAGGgtgAGTAATCTGGGACTAAAAGATCTGCCTGTAGCCGTAAGCTTCCGGATGCCGTCTCAGACAAACCTGCATGATCTGCACAATCACACCATCACTGTGTCTCAGAATGTTACAGCCTGTAACATCGTACCGCCTGAGAAACATGCTGACTGTCCATTTAAG
>TU448405
GagccatttacatttaccttgGCAACCATGAACACGGCATCCGCCCCAAGTACAGCCAGagaattGCGGCAAGTTCCATCTCTAAGCAGCTTCAGCATTTCGGTTTGGCGATCGATGGTGTGATGGACATGGGACAGGATGGTCTGACGGACATTGCTGTTGGAGCACAAGGGACCGTTTTACTCCTGAACCTGAATAAGTTCGACTGCCTGGGCAGCTCGGAAAATGCATTTGCCGTCATTACTCTCAACACCTGCTTCAGTATGACAGAGAACACCAACAGCAAAGGGGCAGTGAAGAGTGGTCTGAACGTGTCGTTGGAGCTCAGTGCTGATGCTGTGAGACAGGACAGTCGGGCGTTTTTCATTAAGGAACAGAAGACGTCCAGGAGTCTGATGACGTCTGTGCTGCTGAACTCAGAGTTTTCCTGTTACAACCATACAGTCTATATGCACaGCTGTGTGAAGGACACAGTGTCTTCGGTGTTATTCCGTCTCAACT
>XM_034300152.1
agagacactgaagagagagagtcagagggaaagaggcagagagagagaccagttggTTCTACAGGTTCTGAAGGATGGCGTTGCTCTTCCTGCTGCTCTGTGctgtctcactctctgatgGGTTTAATATTGACGTGTTGAACCCAGAGCCATTCATAGGAAATAAAGAGGACTTTTTTGGATACAAACTGCAGCAATATCAGTCTGACAAGATGAAACAAATTATCGTCAGCGCTCCATTAGGCGCAAACAGATCAGGAGCgatttttaaatgcacagtgGAGAAGAGAAACTGCAGCCATTTGTATCAGCCagACTTGAAGGAGATCAGGTTCTTTGGGATGTCGATGGCGGTGAGGACGTCTCCATCAGCCACACTCACTAGTTGCAGCCCAAGTTTCTCTCATGAGTGTGATGGAAACTCATATTTGAACGGAATCTGTTACCAGTTCAACAGCAAGCTGAACACCGTCACCAACATCACCGCCGCTTTCCAAGAGTGCACAAAGAGTAAAGTGAACCTGGTCTTCCTTTTCGATGGCTCCAGCAGCATGCAAGCCTCCGACTTtgataagaataaaaaattcatATGGGACATTGTAACAACACTCAAAAACTCATCCATCGAgtttgctGCTGTTCAGTTTTCTAAGACATTTAGTACAGTTTTCACCTTTAAAGATTATGTTAACGGCATGGCGAAGAAGAAACTTGATGAAGAAAAGCACATGAagtcactcacactcacatacaaGGCCATCGACTTCACCCTtaagaatttgtttaataatgtggAGTCCGGTGCAGATCCTGAGGCTACTAAAGCCCTGGTCATCATCACAGATGGAAATCCTTCTGATATAAACACTAACGAGATACAGCGCTGTGAGAAACTCAACATCGCTCGCTTTATCATCGGGGTGGGGAAAATAGACAATTTTGAGAAGCTGAATAAACTTGCCTCAGAGCCGAAAGAGAGCAACATCTTCAGGATTGAAAACTACGATGGACTAAATGGACTTCTGGATAAACTGCAAAATATGATCTATGGCATCAAGgGAGCTCAGGGAAGGAACTATAGAGAAGAGCTGTCTCAGAGTGGATTCAGTGCTGCCAGTGACAAGGACACTCTCATTCTGGGAGCTGTTGGATCTGATAATTGGCGTGGAATGCTGTATGAGGTTACAGGATCTGAAGCTGGGATGGAAATCAAGGACGAAAACCTAAATAAGGACTCGTACAATGGTTACTCTGTTGTGGTTGGACGGAGAGGCAGAGTTTCTCTTGTGTTCTCTGGAGCACCAAGATCTAATCACAGGGGTCAGGTGACTCTGTTTAAAAAGATGACCCACAAATGGGAAGCCATGAGCAACATCTCTGGAGAACAGATTGGCTCGTATTTTggtggatcagtgtgtgtgttagaccaGAACTCCGACAGCAACACTGAATTCCTCGTGGTTGGAGCTCCGCTGTATTACAAACCTCATCCTCAGAGAGAGGGACGGATTTACATCTACAGACTCACacagcagctGAAGTTGGAGAAGGAGTTGGAGATAAGTGAATCAGCTCAGGGTCGGTTTGGGATGACTCTAGCTGCTGTAGCAGATCTGAATGGAGACCAGCTGCAGGATTTAGCAGTTGGAGCTCCACTGGAAGACAATCGAAAAGGagccatttacatttaccttgGCAACCATGAACACGGCATCCGCCCCAAGTACAGCCAGagaattGCGGCAAGTTCCATCTCTAAGCAGCTTCAGCATTTCGGTTTGGCGATCGATGGTGTGATGGACATGGGACAGGATGGTCTGACGGACATTGCTGTTGGAGCACAAGGGACCGTTTTACTCCTGAAAACTCGGCCAGTTGTGTCCATATCAGCGAAGCTCAGTTTCTTTCCCTCTGAAATCAGCCTGAATAAGTTCGACTGCCTGGGCAGCTCGGAAAATGCATTTGCCGTCATTACTCTCAACACCTGCTTCAGTATGACAGAGAACACCAACAGCAAAGGGGCAGTGAAGAGTGGTCTGAACGTGTCGTTGGAGCTCAGTGCTGATGCTGTGAGACAGGACAGTCGGGCGTTTTTCATTAAGGAACAGAAGACGTCCAGGAGTCTGATGACGTCTGTGCTGCTGAACTCAGAGTTTTCCTGTTACAACCATACAGTCTATATGCACaGCTGTGTGAAGGACACAGTGTCTTCGGTGTTATTCCGTCTCAACTTCCACCAGTCTGATCATCAGCCGAGCAGCTCCAACTCCATACTCAACATCGACAGCAAGACCACGGCTCATGTAGAGgtTCCCTTTCAGATTAACTGCAAAAGCAGGAGCTGTGTATCAGACCTGCAGCTGGACTTTAACTTCTTgaacAGCACATTGCTGGTGGTGGACCAGGCATCTTTTATCATCCATGTGACTCTACTGAATAAAGGAGATGACTCGTTCAACACCAGCGTGGTTCTTTTCTACCCTCCTGGATTATCACTCTCGATATTCAAGACCATTGAGTGGAACAGAAGGACTCTGAGCAGTTGTGGAGATCGTGATGATGGAGCACTGAATAAAACCACCTGCAGTATCAGTTTACCGGTTTATCGCAGAGACACGCGTATGACACTTGTGGCcagcagtgataACAATGGAAATACAAGTATCACCACAGTGGCGAAGACTCTGCCTGTTCAGTTCAGTGTAGATGTGGACATCAGCCCTGTTCCTGAGCTTTCTGTAACATATCTGGATTTCTCTCTGGAAGATAAAGGCCCAAAACCTATCACTGTTGTGTATAGGgtgAGTAATCTGGGACTAAAAGATCTGCCTGTAGCCGTAAGCTTCCGGATGCCGTCTCAGACAAACCTGCATGATCTGCACAATCACACCATCACTGTGTCTCAGAATGTTACAGCCTGTAACATCGTACCGCCTGAGAAACATGCTGACTGTCCATTTAAGTGGTGTGCGAACTTCATGTGTCATTCGTTCTCACTGGATCCCAGGTCTGCTGTCCAGTTTGAGCTGAGGATGCTCATCAGCTTCCCTAATAAACAACAATACACAGggAAATTTTCTTTCAGTGAGTTTAGGAAGGAAGAtgatttttctgtctttgctcAGCTGGACTTTGATAAAAAGCTTTATCATCAGATATCCAGTGAGaacgACACAAGCAGATTTCACCAGGCTAAGaCCAGTGTGAAAGCAGAGCTGGTCATTCCTCCTGATATGCTTATGATCAGAGGaacaggtggaggaggtggattTCTCctgctcatcatcatcttcatagTGCTGTTGAAGtgtggtTTTTTTAAGCGTACACGTCCTGAAATGAGTGAGAACAGtgctgaagaagaagatgaagtgTGCAGTGCTGAAACAAACGGAAAGATGGGAGAATCTCCTTCCACATCTGAAGAGAAACCGTTCATCCCTGCTGGAGGAAACAATGTTGTGTCAGaaaatggagggagagagaatggagaaatggagaaaggagaaagtgTGGAGTGAAAAGTCTTCACTGATTGAGCTACTGATTGTTTATTAGCATGATTCTACTTCTTTAGCTTAgctacagtcccctctgaaaatattggaacagcaaggccaattctttcctttttgttatacactgaagacatttgggtttgagacatgtttacatctagatgtgttaaacaacttagaaaatGGCATGTTTGGTGGCAGACCAAACCTGttagattgtttaaacaattaatagctctgaatgtcttctctgggtttgagccctgggtttcatctgtgaagactgcatttgttgttaaaaaggataaatcaCCATGaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448402 False 322 lncRNA 0.45 5 18854292 18859587
TU448405 False 501 TUCP 0.50 5 18870695 18879896
XM_034300152.1 True 3838 mRNA 0.45 31 18851286 18912617

Neighbor

gene id symbol gene type direction distance location
LOC117595722 LOC108258755 coding downstream 100209 18744436 ~ 18751077 (-)
LOC113524849 gga2 coding downstream 212189 18627935 ~ 18639097 (-)
LOC113524846 NA coding downstream 251768 18594473 ~ 18599518 (-)
LOC113524851 LOC108258727 coding downstream 265020 18564829 ~ 18586266 (-)
LOC113524845 NA coding downstream 286370 18551393 ~ 18564916 (-)
LOC113525404 LOC108258581 coding upstream 392053 19304670 ~ 19313410 (-)
G378328 LOC108258740 non-coding downstream 23334 18794343 ~ 18827952 (-)
G378336 NA non-coding downstream 45957 18804616 ~ 18805329 (-)
G378335 NA non-coding downstream 46775 18801433 ~ 18804511 (-)
LOC117596138 NA non-coding downstream 60060 18790462 ~ 18791226 (-)
G378297 NA non-coding downstream 141644 18709272 ~ 18709642 (-)
G378353 NA non-coding upstream 7358 18919975 ~ 18920912 (-)
G378395 NA non-coding upstream 60738 18973355 ~ 18973895 (-)
G378397 NA non-coding upstream 70175 18982792 ~ 18983021 (-)
G378398 NA non-coding upstream 70606 18983223 ~ 18983423 (-)
G378401 NA non-coding upstream 81551 18994168 ~ 18994872 (-)
LOC117596153 LOC108258823 other downstream 108921 18690049 ~ 18742365 (-)
LOC117596152 NA other downstream 166031 18680267 ~ 18685255 (-)
ears2 ears2 other downstream 202897 18620815 ~ 18648389 (-)
LOC113524840 NA other downstream 226115 18611477 ~ 18625171 (-)
G378247 NA other downstream 478801 18370282 ~ 18372485 (-)
G378357 LOC108258755 other upstream 29862 18942479 ~ 18943175 (-)

Expression


Co-expression Network