G378354 (LOC108258755)


Basic Information

Item Value
gene id G378354
gene name LOC108258755
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18937500 ~ 18942328 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448412
TGTGAGCAGCTGCGCGCTCGTGCGTGCTTGccgcttcctcttcctcctcttcctcctcctcctgctcctctgcCCTGTGCTGGGGCTCGCGGCCGGCGGCGCGGAGCATGCTGGGGTTTGTCCCAACTTCCTGAACCCTCACCTGTGGGTGGACGCGCAGAGCACGTGCGAGAGGGAGTGCAACACCGACCAGgactGTGCTATCTTTGAAAAATGTTGCACAAATGTGTGTGGTCTGCTCAGCTGTGTTGCTGCTCGTTTCTCAGACGATTCCTCCCCATCCCTTGCTGCTCCTGATGGACAACCAGGTACAAATGTGTCCTCTGTGGGTGGGGCCAGCTGTGATGGCTTCCTTTGcagccagcagggggcagagtgtgtgatgtgggcGGGTCAGCCCGTGTGTAAGTGTCAGGATCACTGTGAGAGTGAGCCCAGCTTCACCTGTGCCTCTGATGGCTTGACGTACTTCAACCGGTGTTACATGGATGCCGAGGCGTGTGTTCAGGGCGTGACACTCACTGTGGTCACATGCCGATATCACCTGTATGCAAGCCCCACCCCATCAGACACCACAGTCCCGCCCACGCCCACTTCCTCTGCCCCTTTCCCCCCTGCTCTCTACTCCAACCCCCAGCACCGGATTGTTTACCTGGGTGGAACTGTCAGCTTCCACTGCGATGTGATTGGACATCCGAAGCCTGACATCACCTGGGAAAAGCAATCAGAGCGTCAAATCATGCGGCCAGATCAGATGTATGGTAATGTCGTAATAACAAACATCGGACAGCTGGTTGTATACAATGCTCAGGTGTTTGACACAGGAATCTACACCTGTGTTGCTCGCAATTCGGTTGGCGTTCTGCGTGCTGATTACCCTCTTTCAGTCATTCGG
>TU448413
GAGCAATAAGACGGAAGACATGTCACTGTCCCAATCTAAGgactGTGCTATCTTTGAAAAATGTTGCACAAATGTGTGTGGTCTGCTCAGCTGTGTTGCTGCTCGTTTCTCAGACGATTCCTCCCCATCCCTTGCTGCTCCTGATGGACAACCAGGTACAAATGTGTCCTCTGTGGGTGGGGCCAGCTGTGATGGCTTCCTTTGcagccagcagggggcagagtgtgtgatgtgggcGGGTCAGCCCGTGTGTAAGTGTCAGGATCACTGTGAGAGTGAGCCCAGCTTCACCTGTGCCTCTGATGGCTTGACGTACTTCAACCGGTGTTACATGGATGCCGAGGCGTGTGTTCAGGGCGTGACACTCACTGTGGTCACATGCCGATATCACCTGTATGCAAGCCCCACCCCATCAGACACCACAGTCCCGCCCACGCCCACTTCCTCTGCCCCTTTCCCCCCTGCTCTCTACTCCAACCCCCAGCACCGGATTGTTTACCTGGGTGGAACTGTCAGCTTCCACTGCGATGTGATTGGACATCCGAAGCCTGACATCACCTGGGAAAAGCAATCAGAGCGTCAAATCATGCGGCCAGATCAGATGTATGGTAATGTCGTAATAACAAACATCGGACAGCTGGTTGTATACAATGCTCAGGTGTTTGACACAGGAATCTACACCTGTGTTGCTCGCAATTCGGTTGGCGTTCTGCGTGCTGATTACCCTCTTTCAGTCATTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448412 True 895 TUCP 0.57 2 18937500 18942328
TU448413 False 742 TUCP 0.53 2 18938874 18942328

Neighbor

gene id symbol gene type direction distance location
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 262899 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 409904 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 432760 18498988 ~ 18504740 (+)
LOC117596190 gtf3c1 coding upstream 546850 18385927 ~ 18390650 (+)
LOC113524838 bfar coding upstream 562095 18369044 ~ 18375405 (+)
LOC113524847 LOC108258823 coding downstream 92183 19034511 ~ 19105679 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding downstream 183506 19125834 ~ 19139249 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 257699 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 325155 19267483 ~ 19283319 (+)
G378313 NA non-coding upstream 100389 18834447 ~ 18837111 (+)
G378308 NA non-coding upstream 103278 18799774 ~ 18834222 (+)
G378306 NA non-coding upstream 109825 18794095 ~ 18827675 (+)
G378307 NA non-coding upstream 132236 18804612 ~ 18805264 (+)
G378296 NA non-coding upstream 227787 18709289 ~ 18709713 (+)
G378361 NA non-coding downstream 30650 18972978 ~ 18973189 (+)
G378367 NA non-coding downstream 61416 19003744 ~ 19004045 (+)
G378369 NA non-coding downstream 63056 19005384 ~ 19005616 (+)
G378380 NA non-coding downstream 155080 19097408 ~ 19097613 (+)
G378387 NA non-coding downstream 227514 19169842 ~ 19170049 (+)
LOC113525834 LOC108258740,LOC108412431 other upstream 115444 18781038 ~ 18822056 (+)
cdc37 cdc37 other upstream 327516 18602567 ~ 18609984 (+)
txndc11 txndc11 other upstream 387531 18382323 ~ 18549969 (+)
G378160 NA other upstream 441457 18494840 ~ 18496043 (+)
G378105 LOC108258757 other upstream 650190 18282994 ~ 18287310 (+)
LOC113529661 LOC108258823 other downstream 3754 18946082 ~ 19021923 (+)
G378376 NA other downstream 197477 19139805 ~ 19142137 (+)
LOC113525637 LOC108258744,LOC108413824 other downstream 200353 19142681 ~ 19168611 (+)

Expression


Co-expression Network