G378361


Basic Information

Item Value
gene id G378361
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18972978 ~ 18973189 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448420
ATCATCTACCAAGGGAATTCACTgctgtgtttatagctgctgtttaCATCCGTCCGCGAGCCAACTCCACAGCCACGCTTGGCGAGCTCCACAACGTTTTCAGCGCGCTAGAGACGGCTCACCCTGATGCTGTTTTTATCACTGCTGGTGACTTTAATCAGTGCAGTTTACGGACTATACTTTCCAAATATCACCAACATGTGGACATTCCC

Function

GO:

id name namespace
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0098552 side of membrane cellular_component
GO:0098562 cytoplasmic side of membrane cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448420 True 212 lncRNA 0.49 1 18972978 18973189

Neighbor

gene id symbol gene type direction distance location
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 298377 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 445382 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 468238 18498988 ~ 18504740 (+)
LOC117596190 gtf3c1 coding upstream 582328 18385927 ~ 18390650 (+)
LOC113524838 bfar coding upstream 597573 18369044 ~ 18375405 (+)
LOC113524847 LOC108258823 coding downstream 61322 19034511 ~ 19105679 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding downstream 152645 19125834 ~ 19139249 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 226838 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 294294 19267483 ~ 19283319 (+)
G378313 NA non-coding upstream 135867 18834447 ~ 18837111 (+)
G378308 NA non-coding upstream 138756 18799774 ~ 18834222 (+)
G378306 NA non-coding upstream 145303 18794095 ~ 18827675 (+)
G378307 NA non-coding upstream 167714 18804612 ~ 18805264 (+)
G378296 NA non-coding upstream 263265 18709289 ~ 18709713 (+)
G378367 NA non-coding downstream 30555 19003744 ~ 19004045 (+)
G378369 NA non-coding downstream 32195 19005384 ~ 19005616 (+)
G378380 NA non-coding downstream 124219 19097408 ~ 19097613 (+)
G378387 NA non-coding downstream 196653 19169842 ~ 19170049 (+)
G378354 LOC108258755 other upstream 30650 18937500 ~ 18942328 (+)
LOC113525834 LOC108258740,LOC108412431 other upstream 150922 18781038 ~ 18822056 (+)
cdc37 cdc37 other upstream 362994 18602567 ~ 18609984 (+)
txndc11 txndc11 other upstream 423009 18382323 ~ 18549969 (+)
G378160 NA other upstream 476935 18494840 ~ 18496043 (+)
G378376 NA other downstream 166616 19139805 ~ 19142137 (+)
LOC113525637 LOC108258744,LOC108413824 other downstream 169492 19142681 ~ 19168611 (+)

Expression


Co-expression Network