G378376


Basic Information

Item Value
gene id G378376
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 19139805 ~ 19142137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448436
cacacacacacacacacacatacacacacacttacactcactaGGCAGCCTgcgcagccacacacacacacacacacatacacacatatttacacacatacacacatatttacacacgcacacacatatttacacacgtacacacatatttacacacgcacacacatatttacacacatacacacatattcacacacacacacacatatttacacacacacacacatta
>TU448438
TGTTCTGATAATCAGCTGTACGATATGTTGGAATATTCAGCACTGTTGCGGGTGTGATGCGGTTGTGTTGCGGGTGTGATGCGGGTGTGATGCgaatgtgatgcGGGTGTGATGCGGTTGTGTTGTGGGTGTGATGCGGGTGTGTTGTGAATGTGATGCGGGTGTGATGCGGTTGTGCTGATCTGCCCTACAGTGATATCCAGCGTACGATAAAATACACGGTCTGCGCTATGTGCTAGCTAAAGTTGTGGCCCTCAGGCTGCCGTATTTCAGTGTTAAGGTCTCagtgtttctgttcttttcGTTAAGACTGTTGCTGCCCCGTCAGAGCACGCTGCTACGATTCAGCACTAACACACGCCAAACGCCCCGCACCCTTCCCCCACGCCGACCCGCATCCTCGCGACAtgatcacttacgttatagcagctataaacagctgttccctcaccagcctacctctgacactggagactccttccataaatgttacataccAGTCTCATCACAGAAAACTGTATCGCACCAGACGCTTTTTTATCCGTTGTGTTTACTTGCAATGTTTCACgttaattacattattacattcaTTAGTTAGCTACTTACACAGTTTTCCCTCAGTAACTATGGCAACCACCAGATACACGTTTAATCATCgtacacataaaacacaaacctCTACATCAcaccttctctctgtctgcacaCTCACCAGGCAGCCTgcgcagccacacacacacacacacacacacacacacacttacactcaccaGGCAGCCTgcgcagccacacacacacacacacatacacacacacttacactcactaGGCAGCCTgcgcagccacacacacacacacacacatacacacatatttacacacatacacacatatttacacacgcacacacatatttacacacgtacacacatatttacacacgcacacacatatttacacacatacacacatattcacacacacacacacatatttacacacacacacacatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448436 False 229 lncRNA 0.41 2 19141705 19142137
TU448438 True 1014 TUCP 0.47 6 19139805 19142137

Neighbor

gene id symbol gene type direction distance location
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding upstream 556 19125834 ~ 19139249 (+)
LOC113524847 LOC108258823 coding upstream 34126 19034511 ~ 19105679 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 465204 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 612209 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 635065 18498988 ~ 18504740 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 57890 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 125346 19267483 ~ 19283319 (+)
G378380 NA non-coding upstream 42192 19097408 ~ 19097613 (+)
G378369 NA non-coding upstream 134189 19005384 ~ 19005616 (+)
G378367 NA non-coding upstream 135760 19003744 ~ 19004045 (+)
G378361 NA non-coding upstream 166616 18972978 ~ 18973189 (+)
G378313 NA non-coding upstream 302694 18834447 ~ 18837111 (+)
G378387 NA non-coding downstream 27705 19169842 ~ 19170049 (+)
LOC113529661 LOC108258823 other upstream 117882 18946082 ~ 19021923 (+)
G378354 LOC108258755 other upstream 197477 18937500 ~ 18942328 (+)
LOC113525834 LOC108258740,LOC108412431 other upstream 317749 18781038 ~ 18822056 (+)
cdc37 cdc37 other upstream 529821 18602567 ~ 18609984 (+)
txndc11 txndc11 other upstream 589836 18382323 ~ 18549969 (+)
LOC113525637 LOC108258744,LOC108413824 other downstream 544 19142681 ~ 19168611 (+)

Expression


Co-expression Network