Fish Transcriptome and Expression Database

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economic fish

G378387

Basic Information

Item	Value
gene id	G378387
gene name	NA
gene type	non-coding
species	striped catfish (Pangasianodon hypophthalmus)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NC_047620.1
NCBI id	CM018566.1
chromosome length	19313417
location	19169842 ~ 19170049 (+)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU448461
tccacacagccccaacactccacacagccctaAACACAGTCagaacactccacacagccctaACACTCCACAAAGCCCTAAACACAGCCAGAACACTGCACACAGCCCTAACACAgccccaacactccacacagccctaTCACAgccccaacactccacacagccctaACACAGCCCCAGCACTCCACACAGCCCTAACACAGCCCCA

Function

GO:

id	name	namespace
GO:0016310	phosphorylation	biological_process

KEGG:

id	description
ko00010	Glycolysis / Gluconeogenesis
ko00030	Pentose phosphate pathway
ko00051	Fructose and mannose metabolism
ko00500	Starch and sucrose metabolism
ko00710	Carbon fixation in photosynthetic organisms
ko00680	Methane metabolism

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU448461	True	208	lncRNA	0.57	1	19169842	19170049

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC113525760	zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398	coding	upstream	30593	19125834 ~ 19139249 (+)
LOC113524847	LOC108258823	coding	upstream	64163	19034511 ~ 19105679 (+)
sp6	LOC108258788,LOC108418435,LOC108418467	coding	upstream	495241	18664087 ~ 18674601 (+)
LOC117596189	NA	coding	upstream	642246	18523161 ~ 18527596 (+)
LOC113524839	NA	coding	upstream	665102	18498988 ~ 18504740 (+)
LOC113525638	zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875	coding	downstream	29978	19200027 ~ 19224919 (+)
LOC117596155	LOC108258581	coding	downstream	97434	19267483 ~ 19283319 (+)
G378380	NA	non-coding	upstream	72229	19097408 ~ 19097613 (+)
G378369	NA	non-coding	upstream	164226	19005384 ~ 19005616 (+)
G378367	NA	non-coding	upstream	165797	19003744 ~ 19004045 (+)
G378361	NA	non-coding	upstream	196653	18972978 ~ 18973189 (+)
G378313	NA	non-coding	upstream	332731	18834447 ~ 18837111 (+)
LOC113525637	LOC108258744,LOC108413824	other	upstream	1231	19142681 ~ 19168611 (+)
G378376	NA	other	upstream	27705	19139805 ~ 19142137 (+)
LOC113529661	LOC108258823	other	upstream	147919	18946082 ~ 19021923 (+)
G378354	LOC108258755	other	upstream	227514	18937500 ~ 18942328 (+)
LOC113525834	LOC108258740,LOC108412431	other	upstream	347786	18781038 ~ 18822056 (+)

Expression

Co-expression Network