LOC113524859 (LOC108258821)


Basic Information

Item Value
gene id LOC113524859
gene name LOC108258821
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18376579 ~ 18379765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911218.2
cacaacacacacctgtacgCGTCTCTCCTGTCCCAGTGCAGGTGAGATGGCTGTGCTGtacaccacaacactgttgatCCTCACAGttGTGtgctccacatacacacacactacgttGGAGCTGTCTGGTGTGGTGAAGTGCAGCACGGGACGCTCGGCACTCGCTTACATCATGTACGGGTGTTACTGCGGAGTAGGAGGGGAGGGGTGGCCCCGAGACCCTGCTGActggtgttgTCACAAGCACGACTGCTGCTACGCGAAGGCTGAGGATCAGGGCTgtcacacaaagacacacacgtATCCATGGAGCTGTGACAGCCAATCACTGGACtgcggctctCTGAAGGACCGCTGTGAGAagatgttgtgtgtatgtgatcgAGAAGCAGCTCAGTGTCTGAAAAAAGCGCCATATAACCTCAGATACGCCGCGTGGCCCGACTTCCTGTGTGGACCTGAACTGCCGACATGTGCTtactactgacacacacacacacacacacacacacacacacacacacacagtactactgatttagctaaataatgctaAGCCTAAAACTTCCACTGACCTTAAATTAGTTCGATGTTTACTATATAacatttccttctttatttACGGCTGATGTAGCTAACAGAATTAGTAGCTAACATGTTAGCATCGCTATGCAGTTGTTCAGTGTCTCAAACAGCTTCACTTCAAGGATAAATCACTTCCTTCTTTACTAAATAATGTTGTTTGAGTCGACCGTGTGGTGAAGTAAGCCTTCATGCTGCATGATGCTACTCTGGCTTGTAGCTCAGACACTGAGCACATCTCAGCTGATTGATTATTTCTATAAAtgagacattttggacaaattaTTTAGAATTAAAACCTCTTTAACACCAAActgaaataatttctttttatac

Function

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911218.2 True 918 mRNA 0.46 4 18376579 18379765

Neighbor

gene id symbol gene type direction distance location
LOC113524861 NA coding downstream 9067 18366099 ~ 18367512 (-)
LOC113524862 LOC108414501 coding downstream 15899 18340493 ~ 18360680 (-)
LOC113524853 gtf3c1 coding downstream 38923 18328532 ~ 18337656 (-)
LOC117596179 LOC108258739 coding downstream 52508 18310772 ~ 18324071 (-)
LOC113546189 LOC108258757 coding downstream 83618 18285478 ~ 18292961 (-)
LOC117596188 LOC108258748,LOC108258762,LOC108258764,LOC108258760 coding upstream 12665 18392430 ~ 18404667 (-)
LOC113524842 LOC108258760,LOC108258748,LOC108258762,LOC108258764 coding upstream 27139 18406904 ~ 18471323 (-)
LOC113524843 LOC108258748,LOC108258762,LOC108258760,LOC108258764 coding upstream 71843 18451608 ~ 18471315 (-)
LOC113524841 LOC108258748,LOC108258762,LOC108258764,LOC108258760 coding upstream 95633 18475398 ~ 18483881 (-)
thumpd1 NA coding upstream 112607 18492372 ~ 18496794 (-)
G378241 NA non-coding downstream 1042 18335677 ~ 18375537 (-)
G378220 NA non-coding downstream 65923 18310283 ~ 18310656 (-)
G378232 NA non-coding downstream 67650 18308412 ~ 18308929 (-)
G378229 NA non-coding downstream 69255 18306021 ~ 18307324 (-)
G378222 NA non-coding downstream 95662 18277277 ~ 18280917 (-)
G378239 NA non-coding upstream 7311 18387076 ~ 18390173 (-)
G378252 NA non-coding upstream 42852 18422617 ~ 18423142 (-)
G378254 NA non-coding upstream 126340 18506105 ~ 18570213 (-)
G378265 NA non-coding upstream 163906 18543671 ~ 18544156 (-)
G378274 NA non-coding upstream 229431 18609196 ~ 18610008 (-)
G378247 NA other downstream 4094 18370282 ~ 18372485 (-)
gpank1 gpank1 other downstream 10648 18361798 ~ 18365931 (-)
LOC113524896 LOC108258753 other downstream 209619 18163546 ~ 18166960 (-)
G377994 LOC108258810 other downstream 562134 17793686 ~ 17814445 (-)
ubl5 ubl5 other downstream 663950 17707968 ~ 17712629 (-)
LOC113524840 NA other upstream 231712 18611477 ~ 18625171 (-)
ears2 ears2 other upstream 241050 18620815 ~ 18648389 (-)
LOC117596152 NA other upstream 300502 18680267 ~ 18685255 (-)
LOC117596153 LOC108258823 other upstream 310284 18690049 ~ 18742365 (-)
LOC113524858 NA other upstream 471521 18851286 ~ 18912617 (-)

Expression


Co-expression Network